Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00275 and BWI76_RS00280 are separated by 5 nucleotides BWI76_RS00280 and BWI76_RS00285 are separated by 27 nucleotides BWI76_RS00285 and BWI76_RS00290 are separated by 101 nucleotides
BWI76_RS00275: BWI76_RS00275 - ribose ABC transporter ATP-binding protein RbsA, at 56,739 to 58,244
_RS00275
BWI76_RS00280: BWI76_RS00280 - ribose ABC transporter permease, at 58,250 to 59,215
_RS00280
BWI76_RS00285: BWI76_RS00285 - D-ribose ABC transporter substrate-binding protein, at 59,243 to 60,133
_RS00285
BWI76_RS00290: BWI76_RS00290 - Ribokinase (EC 2.7.1.15) <small>(from data)</small>, at 60,235 to 61,164
_RS00290
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 58.395 kb on - strand, within BWI76_RS00280 at 58.395 kb on - strand, within BWI76_RS00280 at 58.442 kb on - strand at 58.490 kb on + strand, within BWI76_RS00280 at 58.779 kb on + strand, within BWI76_RS00280 at 58.819 kb on + strand, within BWI76_RS00280 at 58.829 kb on + strand, within BWI76_RS00280 at 59.158 kb on - strand at 59.173 kb on + strand at 59.215 kb on + strand at 59.231 kb on - strand at 59.272 kb on - strand at 59.417 kb on - strand, within BWI76_RS00285 at 59.538 kb on - strand, within BWI76_RS00285 at 59.546 kb on - strand, within BWI76_RS00285 at 59.758 kb on + strand, within BWI76_RS00285 at 59.758 kb on + strand, within BWI76_RS00285 at 59.775 kb on + strand, within BWI76_RS00285 at 59.830 kb on - strand, within BWI76_RS00285 at 60.108 kb on + strand at 60.116 kb on - strand at 60.261 kb on - strand at 60.289 kb on + strand at 60.371 kb on + strand, within BWI76_RS00290 at 60.462 kb on + strand, within BWI76_RS00290 at 60.500 kb on - strand, within BWI76_RS00290 at 60.505 kb on - strand, within BWI76_RS00290 at 60.519 kb on - strand, within BWI76_RS00290 at 60.597 kb on - strand at 60.599 kb on - strand, within BWI76_RS00290 at 60.635 kb on + strand, within BWI76_RS00290 at 60.656 kb on + strand, within BWI76_RS00290 at 60.734 kb on - strand, within BWI76_RS00290 at 60.734 kb on - strand, within BWI76_RS00290 at 60.793 kb on + strand, within BWI76_RS00290 at 60.820 kb on - strand, within BWI76_RS00290 at 60.821 kb on - strand, within BWI76_RS00290 at 60.865 kb on - strand, within BWI76_RS00290 at 61.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 58,395 - BWI76_RS00280 0.15 -0.8 58,395 - BWI76_RS00280 0.15 -0.6 58,442 - +0.4 58,490 + BWI76_RS00280 0.25 +7.7 58,779 + BWI76_RS00280 0.55 -0.2 58,819 + BWI76_RS00280 0.59 -1.7 58,829 + BWI76_RS00280 0.60 +1.9 59,158 - +1.5 59,173 + -0.4 59,215 + +0.4 59,231 - -0.5 59,272 - -0.0 59,417 - BWI76_RS00285 0.20 -0.3 59,538 - BWI76_RS00285 0.33 +0.3 59,546 - BWI76_RS00285 0.34 +0.4 59,758 + BWI76_RS00285 0.58 -0.2 59,758 + BWI76_RS00285 0.58 -0.1 59,775 + BWI76_RS00285 0.60 -0.2 59,830 - BWI76_RS00285 0.66 +0.5 60,108 + +0.4 60,116 - +0.4 60,261 - -1.2 60,289 + -0.9 60,371 + BWI76_RS00290 0.15 -0.8 60,462 + BWI76_RS00290 0.24 +0.3 60,500 - BWI76_RS00290 0.28 -0.1 60,505 - BWI76_RS00290 0.29 -0.9 60,519 - BWI76_RS00290 0.31 -0.5 60,597 - -0.2 60,599 - BWI76_RS00290 0.39 -0.1 60,635 + BWI76_RS00290 0.43 +0.9 60,656 + BWI76_RS00290 0.45 -1.3 60,734 - BWI76_RS00290 0.54 +0.4 60,734 - BWI76_RS00290 0.54 -2.4 60,793 + BWI76_RS00290 0.60 +0.2 60,820 - BWI76_RS00290 0.63 -0.1 60,821 - BWI76_RS00290 0.63 -2.3 60,865 - BWI76_RS00290 0.68 -0.7 61,113 - -0.2
Or see this region's nucleotide sequence