Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19270

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19265 and BWI76_RS19270 overlap by 4 nucleotidesBWI76_RS19270 and BWI76_RS19275 overlap by 4 nucleotides BWI76_RS19265: BWI76_RS19265 - multidrug transporter subunit MdtD, at 4,012,544 to 4,013,959 _RS19265 BWI76_RS19270: BWI76_RS19270 - two-component sensor histidine kinase, at 4,013,956 to 4,015,491 _RS19270 BWI76_RS19275: BWI76_RS19275 - DNA-binding response regulator, at 4,015,488 to 4,016,210 _RS19275 Position (kb) 4013 4014 4015 4016Strain fitness (log2 ratio) -1 0 1 2at 4013.012 kb on + strand, within BWI76_RS19265at 4013.429 kb on - strand, within BWI76_RS19265at 4013.555 kb on + strand, within BWI76_RS19265at 4013.612 kb on - strand, within BWI76_RS19265at 4013.651 kb on - strand, within BWI76_RS19265at 4013.725 kb on + strand, within BWI76_RS19265at 4013.759 kb on - strand, within BWI76_RS19265at 4013.953 kb on + strandat 4014.206 kb on + strand, within BWI76_RS19270at 4014.287 kb on - strand, within BWI76_RS19270at 4014.385 kb on + strand, within BWI76_RS19270at 4014.413 kb on - strand, within BWI76_RS19270at 4014.604 kb on - strand, within BWI76_RS19270at 4014.785 kb on + strand, within BWI76_RS19270at 4015.365 kb on - strandat 4015.803 kb on + strand, within BWI76_RS19275at 4015.817 kb on + strand, within BWI76_RS19275at 4015.867 kb on + strand, within BWI76_RS19275at 4016.167 kb on + strandat 4016.168 kb on - strandat 4016.435 kb on - strandat 4016.454 kb on - strandat 4016.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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4,013,012 + BWI76_RS19265 0.33 -1.0
4,013,429 - BWI76_RS19265 0.62 -0.1
4,013,555 + BWI76_RS19265 0.71 -0.4
4,013,612 - BWI76_RS19265 0.75 +0.7
4,013,651 - BWI76_RS19265 0.78 -0.6
4,013,725 + BWI76_RS19265 0.83 +0.1
4,013,759 - BWI76_RS19265 0.86 +1.6
4,013,953 + -0.3
4,014,206 + BWI76_RS19270 0.16 +2.5
4,014,287 - BWI76_RS19270 0.22 +0.5
4,014,385 + BWI76_RS19270 0.28 +0.2
4,014,413 - BWI76_RS19270 0.30 +0.2
4,014,604 - BWI76_RS19270 0.42 -0.7
4,014,785 + BWI76_RS19270 0.54 +0.2
4,015,365 - +0.0
4,015,803 + BWI76_RS19275 0.44 +0.3
4,015,817 + BWI76_RS19275 0.46 +0.5
4,015,867 + BWI76_RS19275 0.52 +0.9
4,016,167 + +1.2
4,016,168 - +0.3
4,016,435 - +0.1
4,016,454 - -0.3
4,016,481 - -0.5

Or see this region's nucleotide sequence