Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17355

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17345 and BWI76_RS17350 are separated by 10 nucleotidesBWI76_RS17350 and BWI76_RS17355 overlap by 4 nucleotidesBWI76_RS17355 and BWI76_RS17360 are separated by 102 nucleotides BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926 _RS17345 BWI76_RS17350: BWI76_RS17350 - DNA-binding response regulator, at 3,595,937 to 3,596,587 _RS17350 BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963 _RS17355 BWI76_RS17360: BWI76_RS17360 - nitrate reductase, at 3,598,066 to 3,600,666 _RS17360 Position (kb) 3596 3597 3598Strain fitness (log2 ratio) -1 0 1 2 3 4at 3595.701 kb on + strand, within BWI76_RS17345at 3596.379 kb on + strand, within BWI76_RS17350at 3596.476 kb on + strand, within BWI76_RS17350at 3596.924 kb on - strand, within BWI76_RS17355at 3597.047 kb on - strand, within BWI76_RS17355at 3597.338 kb on - strand, within BWI76_RS17355at 3597.382 kb on - strand, within BWI76_RS17355at 3597.444 kb on - strand, within BWI76_RS17355at 3597.522 kb on + strand, within BWI76_RS17355at 3597.537 kb on + strand, within BWI76_RS17355at 3597.545 kb on - strand, within BWI76_RS17355at 3597.858 kb on - strandat 3597.879 kb on - strandat 3598.128 kb on - strandat 3598.212 kb on + strandat 3598.911 kb on + strand, within BWI76_RS17360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
3,595,701 + BWI76_RS17345 0.87 -0.3
3,596,379 + BWI76_RS17350 0.68 -0.3
3,596,476 + BWI76_RS17350 0.83 -0.0
3,596,924 - BWI76_RS17355 0.25 -0.5
3,597,047 - BWI76_RS17355 0.34 +0.9
3,597,338 - BWI76_RS17355 0.55 -1.2
3,597,382 - BWI76_RS17355 0.58 +2.2
3,597,444 - BWI76_RS17355 0.62 +0.8
3,597,522 + BWI76_RS17355 0.68 +3.8
3,597,537 + BWI76_RS17355 0.69 +0.1
3,597,545 - BWI76_RS17355 0.70 -0.0
3,597,858 - +1.0
3,597,879 - -0.5
3,598,128 - -0.2
3,598,212 + +0.7
3,598,911 + BWI76_RS17360 0.32 -0.3

Or see this region's nucleotide sequence