Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02910 and BWI76_RS02915 are separated by 575 nucleotides BWI76_RS02915 and BWI76_RS02920 are separated by 18 nucleotides BWI76_RS02920 and BWI76_RS02925 are separated by 25 nucleotides
BWI76_RS02910: BWI76_RS02910 - hypothetical protein, at 594,761 to 595,153
_RS02910
BWI76_RS02915: BWI76_RS02915 - Hcp family T6SS protein Cts2H, at 595,729 to 596,214
_RS02915
BWI76_RS02920: BWI76_RS02920 - addiction module toxin RelE, at 596,233 to 596,379
_RS02920
BWI76_RS02925: BWI76_RS02925 - type IV secretion protein Rhs, at 596,405 to 598,123
_RS02925
Position (kb) 595
596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 594.782 kb on - strand at 594.797 kb on + strand at 594.828 kb on + strand, within BWI76_RS02910 at 594.881 kb on + strand, within BWI76_RS02910 at 594.928 kb on + strand, within BWI76_RS02910 at 594.971 kb on - strand, within BWI76_RS02910 at 594.983 kb on - strand, within BWI76_RS02910 at 594.998 kb on - strand, within BWI76_RS02910 at 595.026 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.060 kb on + strand, within BWI76_RS02910 at 595.061 kb on + strand, within BWI76_RS02910 at 595.063 kb on - strand, within BWI76_RS02910 at 595.063 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.068 kb on - strand, within BWI76_RS02910 at 595.070 kb on + strand, within BWI76_RS02910 at 595.070 kb on + strand, within BWI76_RS02910 at 595.070 kb on + strand, within BWI76_RS02910 at 595.073 kb on - strand, within BWI76_RS02910 at 595.073 kb on - strand, within BWI76_RS02910 at 595.073 kb on - strand, within BWI76_RS02910 at 595.073 kb on - strand, within BWI76_RS02910 at 595.075 kb on + strand, within BWI76_RS02910 at 595.078 kb on - strand, within BWI76_RS02910 at 595.104 kb on - strand, within BWI76_RS02910 at 595.104 kb on - strand, within BWI76_RS02910 at 595.110 kb on - strand, within BWI76_RS02910 at 595.110 kb on - strand, within BWI76_RS02910 at 595.115 kb on + strand at 595.115 kb on - strand at 595.123 kb on - strand at 595.123 kb on - strand at 595.123 kb on - strand at 595.130 kb on + strand at 595.131 kb on + strand at 595.138 kb on + strand at 595.138 kb on + strand at 595.138 kb on + strand at 595.138 kb on + strand at 595.146 kb on - strand at 595.146 kb on - strand at 595.146 kb on - strand at 595.148 kb on + strand at 595.151 kb on + strand at 595.155 kb on + strand at 595.155 kb on + strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.156 kb on - strand at 595.157 kb on - strand at 595.160 kb on + strand at 595.163 kb on - strand at 595.165 kb on + strand at 595.169 kb on - strand at 595.169 kb on - strand at 595.179 kb on - strand at 595.187 kb on - strand at 595.194 kb on - strand at 595.200 kb on + strand at 595.200 kb on + strand at 595.208 kb on - strand at 595.208 kb on - strand at 595.251 kb on - strand at 595.251 kb on - strand at 595.251 kb on - strand at 595.261 kb on - strand at 595.305 kb on + strand at 595.315 kb on + strand at 595.334 kb on + strand at 595.334 kb on - strand at 595.340 kb on - strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.444 kb on + strand at 595.452 kb on - strand at 595.452 kb on - strand at 595.500 kb on + strand at 595.508 kb on - strand at 595.508 kb on - strand at 595.545 kb on + strand at 595.545 kb on + strand at 595.545 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.546 kb on + strand at 595.554 kb on - strand at 595.554 kb on - strand at 595.554 kb on - strand at 595.598 kb on - strand at 595.612 kb on - strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.623 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.680 kb on + strand at 595.690 kb on + strand at 595.698 kb on - strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.700 kb on + strand at 595.708 kb on - strand at 595.708 kb on - strand at 595.718 kb on - strand at 595.720 kb on + strand at 595.720 kb on + strand at 595.722 kb on + strand at 595.765 kb on + strand at 595.765 kb on + strand at 595.774 kb on - strand at 595.776 kb on + strand at 595.784 kb on - strand, within BWI76_RS02915 at 595.814 kb on + strand at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.817 kb on + strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.825 kb on - strand, within BWI76_RS02915 at 595.851 kb on + strand, within BWI76_RS02915 at 595.851 kb on + strand, within BWI76_RS02915 at 595.869 kb on - strand, within BWI76_RS02915 at 595.932 kb on + strand, within BWI76_RS02915 at 595.939 kb on + strand, within BWI76_RS02915 at 595.941 kb on + strand, within BWI76_RS02915 at 595.947 kb on - strand, within BWI76_RS02915 at 596.048 kb on + strand, within BWI76_RS02915 at 596.215 kb on + strand at 596.216 kb on + strand at 596.223 kb on - strand at 596.231 kb on - strand at 596.239 kb on - strand at 596.332 kb on + strand, within BWI76_RS02920 at 596.427 kb on + strand at 596.638 kb on + strand, within BWI76_RS02925 at 596.803 kb on - strand, within BWI76_RS02925 at 596.895 kb on + strand, within BWI76_RS02925 at 596.972 kb on + strand, within BWI76_RS02925 at 597.121 kb on + strand, within BWI76_RS02925 at 597.213 kb on + strand, within BWI76_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 594,782 - +0.8 594,797 + -1.4 594,828 + BWI76_RS02910 0.17 +0.4 594,881 + BWI76_RS02910 0.31 +0.5 594,928 + BWI76_RS02910 0.42 -0.5 594,971 - BWI76_RS02910 0.53 -0.6 594,983 - BWI76_RS02910 0.56 -0.7 594,998 - BWI76_RS02910 0.60 -1.2 595,026 + BWI76_RS02910 0.67 -0.6 595,060 + BWI76_RS02910 0.76 +2.0 595,060 + BWI76_RS02910 0.76 +1.5 595,060 + BWI76_RS02910 0.76 +0.0 595,060 + -0.7 595,060 + BWI76_RS02910 0.76 +0.2 595,060 + BWI76_RS02910 0.76 -0.2 595,060 + BWI76_RS02910 0.76 -0.6 595,060 + BWI76_RS02910 0.76 -1.2 595,060 + BWI76_RS02910 0.76 -0.2 595,060 + BWI76_RS02910 0.76 +0.4 595,060 + BWI76_RS02910 0.76 +1.0 595,060 + BWI76_RS02910 0.76 -0.5 595,060 + BWI76_RS02910 0.76 +0.2 595,061 + BWI76_RS02910 0.76 +2.2 595,063 - BWI76_RS02910 0.77 -0.1 595,063 - BWI76_RS02910 0.77 +0.1 595,068 - BWI76_RS02910 0.78 +0.9 595,068 - BWI76_RS02910 0.78 -2.4 595,068 - BWI76_RS02910 0.78 +0.3 595,068 - BWI76_RS02910 0.78 +0.1 595,068 - BWI76_RS02910 0.78 -0.7 595,068 - BWI76_RS02910 0.78 -0.3 595,068 - BWI76_RS02910 0.78 -0.3 595,068 - BWI76_RS02910 0.78 +0.4 595,068 - BWI76_RS02910 0.78 -0.8 595,068 - BWI76_RS02910 0.78 -0.2 595,068 - BWI76_RS02910 0.78 -0.7 595,068 - BWI76_RS02910 0.78 -0.3 595,068 - BWI76_RS02910 0.78 -2.9 595,068 - BWI76_RS02910 0.78 -1.1 595,068 - BWI76_RS02910 0.78 -0.6 595,070 + BWI76_RS02910 0.79 +0.1 595,070 + BWI76_RS02910 0.79 -0.6 595,070 + BWI76_RS02910 0.79 -0.2 595,073 - BWI76_RS02910 0.79 +1.1 595,073 - BWI76_RS02910 0.79 -0.8 595,073 - BWI76_RS02910 0.79 +2.6 595,073 - BWI76_RS02910 0.79 -1.1 595,075 + BWI76_RS02910 0.80 -2.1 595,078 - BWI76_RS02910 0.81 -0.1 595,104 - BWI76_RS02910 0.87 +0.4 595,104 - BWI76_RS02910 0.87 -0.0 595,110 - BWI76_RS02910 0.89 -0.2 595,110 - BWI76_RS02910 0.89 -0.2 595,115 + -0.2 595,115 - -1.0 595,123 - +0.8 595,123 - +5.0 595,123 - -0.7 595,130 + +0.3 595,131 + +0.0 595,138 + -0.3 595,138 + -1.6 595,138 + +0.4 595,138 + -0.6 595,146 - +0.2 595,146 - -0.9 595,146 - -1.5 595,148 + +0.1 595,151 + -0.7 595,155 + -0.4 595,155 + -0.6 595,156 - +0.1 595,156 - -0.4 595,156 - -0.6 595,156 - -0.1 595,156 - +0.6 595,156 - -0.2 595,156 - -0.3 595,156 - -1.1 595,156 - -0.4 595,156 - -0.4 595,156 - -0.8 595,157 - -0.1 595,160 + -0.6 595,163 - +0.1 595,165 + +0.4 595,169 - -0.5 595,169 - -0.4 595,179 - +1.3 595,187 - -0.2 595,194 - +1.0 595,200 + -0.1 595,200 + +0.5 595,208 - +0.2 595,208 - -0.7 595,251 - +0.0 595,251 - -0.2 595,251 - +0.7 595,261 - +0.1 595,305 + +0.2 595,315 + +0.0 595,334 + +0.0 595,334 - -0.0 595,340 - -0.3 595,444 + -1.0 595,444 + +0.3 595,444 + -0.1 595,444 + -0.7 595,444 + -1.9 595,452 - +0.3 595,452 - -0.3 595,500 + +0.2 595,508 - +1.3 595,508 - -0.9 595,545 + -0.7 595,545 + +1.8 595,545 + +0.5 595,546 + -0.4 595,546 + -0.8 595,546 + -0.0 595,546 + -1.2 595,546 + +0.4 595,546 + +0.4 595,546 + +0.7 595,554 - -0.1 595,554 - -0.4 595,554 - +0.1 595,598 - +0.2 595,612 - +0.8 595,623 + +0.0 595,623 + +0.1 595,623 + -0.7 595,623 + -0.7 595,623 + +0.8 595,680 + -0.2 595,680 + -0.5 595,680 + -0.3 595,680 + -0.4 595,680 + -0.9 595,680 + -0.4 595,680 + +0.4 595,690 + -0.3 595,698 - -0.2 595,700 + -0.2 595,700 + -0.5 595,700 + +2.4 595,700 + -0.8 595,700 + +1.2 595,700 + -1.1 595,708 - -1.2 595,708 - +0.2 595,718 - -1.2 595,720 + -0.6 595,720 + +0.7 595,722 + -1.1 595,765 + -0.1 595,765 + +0.3 595,774 - +2.4 595,776 + +0.2 595,784 - BWI76_RS02915 0.11 -0.2 595,814 + +0.8 595,817 + BWI76_RS02915 0.18 -1.5 595,817 + BWI76_RS02915 0.18 +0.1 595,817 + BWI76_RS02915 0.18 +0.4 595,817 + BWI76_RS02915 0.18 -0.6 595,817 + BWI76_RS02915 0.18 +0.4 595,825 - BWI76_RS02915 0.20 -0.2 595,825 - BWI76_RS02915 0.20 -2.1 595,825 - BWI76_RS02915 0.20 +1.1 595,851 + BWI76_RS02915 0.25 +0.5 595,851 + BWI76_RS02915 0.25 -0.6 595,869 - BWI76_RS02915 0.29 +0.3 595,932 + BWI76_RS02915 0.42 +3.2 595,939 + BWI76_RS02915 0.43 -0.1 595,941 + BWI76_RS02915 0.44 -1.0 595,947 - BWI76_RS02915 0.45 -0.4 596,048 + BWI76_RS02915 0.66 -0.2 596,215 + -0.1 596,216 + +0.3 596,223 - +0.3 596,231 - +1.4 596,239 - -0.1 596,332 + BWI76_RS02920 0.67 -0.1 596,427 + -0.8 596,638 + BWI76_RS02925 0.14 -0.3 596,803 - BWI76_RS02925 0.23 -0.6 596,895 + BWI76_RS02925 0.29 -0.3 596,972 + BWI76_RS02925 0.33 -0.8 597,121 + BWI76_RS02925 0.42 -1.0 597,213 + BWI76_RS02925 0.47 -0.7
Or see this region's nucleotide sequence