Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01685 and BWI76_RS01690 are separated by 185 nucleotides BWI76_RS01690 and BWI76_RS01695 are separated by 261 nucleotides
BWI76_RS01685: BWI76_RS01685 - methionine synthase, at 343,151 to 346,834
_RS01685
BWI76_RS01690: BWI76_RS01690 - membrane protein, at 347,020 to 348,651
_RS01690
BWI76_RS01695: BWI76_RS01695 - IS110 family transposase, at 348,913 to 349,893
_RS01695
Position (kb) 347
348
349 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 346.086 kb on - strand, within BWI76_RS01685 at 346.116 kb on - strand, within BWI76_RS01685 at 346.329 kb on + strand, within BWI76_RS01685 at 346.413 kb on - strand, within BWI76_RS01685 at 346.575 kb on + strand at 346.610 kb on - strand at 346.756 kb on - strand at 346.872 kb on + strand at 346.909 kb on + strand at 346.909 kb on + strand at 346.910 kb on - strand at 346.983 kb on - strand at 347.029 kb on + strand at 347.043 kb on - strand at 347.097 kb on - strand at 347.097 kb on - strand at 347.121 kb on - strand at 347.263 kb on + strand, within BWI76_RS01690 at 347.321 kb on + strand, within BWI76_RS01690 at 347.478 kb on - strand, within BWI76_RS01690 at 347.495 kb on - strand, within BWI76_RS01690 at 347.657 kb on - strand, within BWI76_RS01690 at 347.813 kb on - strand, within BWI76_RS01690 at 347.927 kb on - strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 347.994 kb on + strand, within BWI76_RS01690 at 348.590 kb on + strand at 348.598 kb on - strand at 348.607 kb on - strand at 348.669 kb on + strand at 348.971 kb on + strand at 349.010 kb on + strand at 349.027 kb on + strand, within BWI76_RS01695 at 349.073 kb on + strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.081 kb on - strand, within BWI76_RS01695 at 349.093 kb on + strand, within BWI76_RS01695 at 349.097 kb on + strand, within BWI76_RS01695 at 349.102 kb on + strand, within BWI76_RS01695 at 349.492 kb on - strand, within BWI76_RS01695 at 349.569 kb on + strand, within BWI76_RS01695 at 349.607 kb on + strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695 at 349.633 kb on - strand, within BWI76_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 346,086 - BWI76_RS01685 0.80 -0.2 346,116 - BWI76_RS01685 0.80 -0.7 346,329 + BWI76_RS01685 0.86 -0.2 346,413 - BWI76_RS01685 0.89 -1.1 346,575 + +5.1 346,610 - -2.2 346,756 - -0.3 346,872 + +0.8 346,909 + -1.4 346,909 + +0.5 346,910 - -0.3 346,983 - -0.4 347,029 + +0.6 347,043 - +0.2 347,097 - +0.5 347,097 - +0.4 347,121 - +0.9 347,263 + BWI76_RS01690 0.15 +0.7 347,321 + BWI76_RS01690 0.18 +3.6 347,478 - BWI76_RS01690 0.28 +2.8 347,495 - BWI76_RS01690 0.29 +0.6 347,657 - BWI76_RS01690 0.39 -0.3 347,813 - BWI76_RS01690 0.49 +0.2 347,927 - BWI76_RS01690 0.56 -0.8 347,994 + BWI76_RS01690 0.60 +0.2 347,994 + BWI76_RS01690 0.60 -1.1 348,590 + +1.2 348,598 - -0.8 348,607 - -1.1 348,669 + +0.5 348,971 + +1.8 349,010 + +0.2 349,027 + BWI76_RS01695 0.12 +3.2 349,073 + BWI76_RS01695 0.16 -0.5 349,081 - BWI76_RS01695 0.17 +0.1 349,081 - BWI76_RS01695 0.17 -0.4 349,081 - BWI76_RS01695 0.17 -0.6 349,081 - BWI76_RS01695 0.17 +0.9 349,093 + BWI76_RS01695 0.18 +0.5 349,097 + BWI76_RS01695 0.19 -0.3 349,102 + BWI76_RS01695 0.19 -0.1 349,492 - BWI76_RS01695 0.59 -1.1 349,569 + BWI76_RS01695 0.67 +0.3 349,607 + BWI76_RS01695 0.71 +0.2 349,633 - BWI76_RS01695 0.73 +0.8 349,633 - BWI76_RS01695 0.73 -0.4
Or see this region's nucleotide sequence