Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01115 and BWI76_RS01120 are separated by 1 nucleotides BWI76_RS01120 and BWI76_RS01125 overlap by 4 nucleotides
BWI76_RS01115: BWI76_RS01115 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 229,444 to 230,574
_RS01115
BWI76_RS01120: BWI76_RS01120 - O-antigen translocase, at 230,576 to 231,826
_RS01120
BWI76_RS01125: BWI76_RS01125 - 4-alpha-L-fucosyltransferase, at 231,823 to 232,902
_RS01125
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.602 kb on + strand, within BWI76_RS01115 at 229.711 kb on - strand, within BWI76_RS01115 at 229.716 kb on - strand, within BWI76_RS01115 at 230.473 kb on + strand at 230.481 kb on - strand at 230.528 kb on - strand at 230.592 kb on - strand at 230.926 kb on - strand, within BWI76_RS01120 at 230.953 kb on + strand, within BWI76_RS01120 at 230.953 kb on + strand, within BWI76_RS01120 at 231.208 kb on + strand, within BWI76_RS01120 at 231.388 kb on + strand, within BWI76_RS01120 at 231.410 kb on + strand, within BWI76_RS01120 at 231.627 kb on - strand, within BWI76_RS01120 at 231.640 kb on + strand, within BWI76_RS01120 at 231.739 kb on - strand at 231.759 kb on - strand at 231.759 kb on - strand at 231.787 kb on + strand at 231.795 kb on - strand at 231.824 kb on + strand at 231.832 kb on - strand at 231.877 kb on + strand at 231.898 kb on + strand at 232.139 kb on - strand, within BWI76_RS01125 at 232.219 kb on - strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.534 kb on + strand, within BWI76_RS01125 at 232.542 kb on - strand, within BWI76_RS01125 at 232.712 kb on - strand, within BWI76_RS01125 at 232.727 kb on + strand, within BWI76_RS01125 at 232.768 kb on + strand, within BWI76_RS01125 at 232.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 229,602 + BWI76_RS01115 0.14 -0.8 229,711 - BWI76_RS01115 0.24 -1.2 229,716 - BWI76_RS01115 0.24 -0.8 230,473 + +0.5 230,481 - -0.8 230,528 - +2.6 230,592 - +0.8 230,926 - BWI76_RS01120 0.28 -1.1 230,953 + BWI76_RS01120 0.30 -2.1 230,953 + BWI76_RS01120 0.30 -1.3 231,208 + BWI76_RS01120 0.51 -0.7 231,388 + BWI76_RS01120 0.65 -0.7 231,410 + BWI76_RS01120 0.67 -1.1 231,627 - BWI76_RS01120 0.84 +0.0 231,640 + BWI76_RS01120 0.85 -1.0 231,739 - -0.6 231,759 - +0.8 231,759 - -1.2 231,787 + +1.2 231,795 - -0.3 231,824 + -0.2 231,832 - -0.8 231,877 + -0.5 231,898 + -2.4 232,139 - BWI76_RS01125 0.29 +1.1 232,219 - BWI76_RS01125 0.37 -1.1 232,534 + BWI76_RS01125 0.66 -2.1 232,534 + BWI76_RS01125 0.66 +0.5 232,534 + BWI76_RS01125 0.66 -2.2 232,542 - BWI76_RS01125 0.67 -1.4 232,712 - BWI76_RS01125 0.82 +0.1 232,727 + BWI76_RS01125 0.84 -0.7 232,768 + BWI76_RS01125 0.88 -1.6 232,795 - +0.6
Or see this region's nucleotide sequence