Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27285 and BWI76_RS27290 are separated by 21 nucleotides BWI76_RS27290 and BWI76_RS27295 are separated by 111 nucleotides
BWI76_RS27285: BWI76_RS27285 - glycosyl transferase family protein, at 5,662,984 to 5,664,066
_RS27285
BWI76_RS27290: BWI76_RS27290 - hypothetical protein, at 5,664,088 to 5,665,050
_RS27290
BWI76_RS27295: BWI76_RS27295 - putative lipopolysaccharide heptosyltransferase III, at 5,665,162 to 5,666,238
_RS27295
Position (kb) 5664
5665
5666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5663.232 kb on + strand, within BWI76_RS27285 at 5663.303 kb on + strand, within BWI76_RS27285 at 5663.374 kb on - strand, within BWI76_RS27285 at 5663.374 kb on - strand, within BWI76_RS27285 at 5663.418 kb on - strand, within BWI76_RS27285 at 5663.444 kb on + strand, within BWI76_RS27285 at 5663.464 kb on - strand, within BWI76_RS27285 at 5663.466 kb on + strand, within BWI76_RS27285 at 5663.472 kb on - strand, within BWI76_RS27285 at 5663.483 kb on + strand, within BWI76_RS27285 at 5663.491 kb on - strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.520 kb on + strand, within BWI76_RS27285 at 5663.528 kb on - strand, within BWI76_RS27285 at 5663.528 kb on - strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.541 kb on + strand, within BWI76_RS27285 at 5663.546 kb on + strand, within BWI76_RS27285 at 5663.549 kb on - strand, within BWI76_RS27285 at 5663.549 kb on - strand, within BWI76_RS27285 at 5663.554 kb on - strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.567 kb on + strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.575 kb on - strand, within BWI76_RS27285 at 5663.701 kb on + strand, within BWI76_RS27285 at 5663.701 kb on + strand at 5663.701 kb on + strand, within BWI76_RS27285 at 5663.703 kb on - strand, within BWI76_RS27285 at 5663.709 kb on - strand, within BWI76_RS27285 at 5663.730 kb on + strand, within BWI76_RS27285 at 5663.730 kb on + strand, within BWI76_RS27285 at 5663.738 kb on - strand, within BWI76_RS27285 at 5663.780 kb on + strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.788 kb on - strand, within BWI76_RS27285 at 5663.809 kb on + strand, within BWI76_RS27285 at 5663.828 kb on - strand, within BWI76_RS27285 at 5663.844 kb on - strand, within BWI76_RS27285 at 5663.849 kb on - strand, within BWI76_RS27285 at 5663.850 kb on + strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.858 kb on - strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.867 kb on + strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.875 kb on - strand, within BWI76_RS27285 at 5663.899 kb on - strand, within BWI76_RS27285 at 5663.904 kb on + strand, within BWI76_RS27285 at 5663.910 kb on - strand, within BWI76_RS27285 at 5663.959 kb on + strand at 5663.962 kb on - strand at 5663.962 kb on - strand at 5663.962 kb on - strand at 5664.049 kb on - strand at 5664.059 kb on - strand at 5664.059 kb on - strand at 5664.070 kb on - strand at 5664.070 kb on - strand at 5664.077 kb on + strand at 5664.078 kb on - strand at 5664.078 kb on - strand at 5664.100 kb on + strand at 5664.108 kb on - strand at 5664.118 kb on - strand at 5664.118 kb on - strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.134 kb on + strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.142 kb on - strand at 5664.147 kb on + strand at 5664.221 kb on - strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.237 kb on + strand, within BWI76_RS27290 at 5664.238 kb on - strand, within BWI76_RS27290 at 5664.242 kb on + strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.260 kb on - strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.277 kb on - strand, within BWI76_RS27290 at 5664.380 kb on + strand, within BWI76_RS27290 at 5664.388 kb on - strand, within BWI76_RS27290 at 5664.694 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand at 5664.802 kb on + strand, within BWI76_RS27290 at 5664.802 kb on + strand, within BWI76_RS27290 at 5665.002 kb on + strand at 5665.078 kb on + strand at 5665.589 kb on + strand, within BWI76_RS27295
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,663,232 + BWI76_RS27285 0.23 +0.2 5,663,303 + BWI76_RS27285 0.29 -0.5 5,663,374 - BWI76_RS27285 0.36 -0.7 5,663,374 - BWI76_RS27285 0.36 -0.5 5,663,418 - BWI76_RS27285 0.40 -1.1 5,663,444 + BWI76_RS27285 0.42 -0.6 5,663,464 - BWI76_RS27285 0.44 +0.1 5,663,466 + BWI76_RS27285 0.45 +0.2 5,663,472 - BWI76_RS27285 0.45 +1.9 5,663,483 + BWI76_RS27285 0.46 +0.2 5,663,491 - BWI76_RS27285 0.47 -1.6 5,663,520 + BWI76_RS27285 0.49 -0.0 5,663,520 + BWI76_RS27285 0.49 -0.9 5,663,520 + BWI76_RS27285 0.49 +0.3 5,663,528 - BWI76_RS27285 0.50 +1.4 5,663,528 - BWI76_RS27285 0.50 -0.0 5,663,541 + BWI76_RS27285 0.51 -0.4 5,663,541 + BWI76_RS27285 0.51 -0.4 5,663,541 + BWI76_RS27285 0.51 +0.5 5,663,541 + BWI76_RS27285 0.51 -1.7 5,663,541 + BWI76_RS27285 0.51 +0.3 5,663,541 + BWI76_RS27285 0.51 -0.8 5,663,541 + BWI76_RS27285 0.51 -0.9 5,663,541 + BWI76_RS27285 0.51 +0.1 5,663,546 + BWI76_RS27285 0.52 +0.2 5,663,549 - BWI76_RS27285 0.52 -0.1 5,663,549 - BWI76_RS27285 0.52 -0.0 5,663,554 - BWI76_RS27285 0.53 -0.3 5,663,567 + BWI76_RS27285 0.54 -0.4 5,663,567 + BWI76_RS27285 0.54 -3.4 5,663,567 + BWI76_RS27285 0.54 -2.5 5,663,567 + BWI76_RS27285 0.54 -0.1 5,663,567 + BWI76_RS27285 0.54 +0.1 5,663,575 - BWI76_RS27285 0.55 -0.0 5,663,575 - BWI76_RS27285 0.55 +0.0 5,663,575 - BWI76_RS27285 0.55 +3.8 5,663,575 - BWI76_RS27285 0.55 -2.6 5,663,701 + BWI76_RS27285 0.66 +2.0 5,663,701 + -0.6 5,663,701 + BWI76_RS27285 0.66 +1.0 5,663,703 - BWI76_RS27285 0.66 +0.8 5,663,709 - BWI76_RS27285 0.67 +0.1 5,663,730 + BWI76_RS27285 0.69 +0.4 5,663,730 + BWI76_RS27285 0.69 +1.1 5,663,738 - BWI76_RS27285 0.70 +0.2 5,663,780 + BWI76_RS27285 0.73 +0.1 5,663,788 - BWI76_RS27285 0.74 -0.5 5,663,788 - BWI76_RS27285 0.74 -0.2 5,663,788 - BWI76_RS27285 0.74 -0.8 5,663,788 - BWI76_RS27285 0.74 +0.3 5,663,788 - BWI76_RS27285 0.74 -0.3 5,663,809 + BWI76_RS27285 0.76 +1.3 5,663,828 - BWI76_RS27285 0.78 +0.3 5,663,844 - BWI76_RS27285 0.79 -0.6 5,663,849 - BWI76_RS27285 0.80 -0.1 5,663,850 + BWI76_RS27285 0.80 +0.1 5,663,858 - BWI76_RS27285 0.81 -0.8 5,663,858 - BWI76_RS27285 0.81 +2.1 5,663,858 - BWI76_RS27285 0.81 +0.1 5,663,867 + BWI76_RS27285 0.82 +0.0 5,663,867 + BWI76_RS27285 0.82 +1.0 5,663,867 + BWI76_RS27285 0.82 +0.4 5,663,867 + BWI76_RS27285 0.82 -0.2 5,663,875 - BWI76_RS27285 0.82 +0.9 5,663,875 - BWI76_RS27285 0.82 -1.3 5,663,875 - BWI76_RS27285 0.82 +1.0 5,663,899 - BWI76_RS27285 0.84 +0.0 5,663,904 + BWI76_RS27285 0.85 -0.3 5,663,910 - BWI76_RS27285 0.86 -0.3 5,663,959 + +0.1 5,663,962 - +0.2 5,663,962 - -0.9 5,663,962 - +0.1 5,664,049 - -0.1 5,664,059 - +1.4 5,664,059 - -0.1 5,664,070 - +1.5 5,664,070 - +0.3 5,664,077 + +2.5 5,664,078 - -0.9 5,664,078 - -0.5 5,664,100 + +0.1 5,664,108 - -0.2 5,664,118 - -0.5 5,664,118 - -0.4 5,664,134 + -1.7 5,664,134 + -0.5 5,664,134 + -1.4 5,664,134 + -1.0 5,664,134 + -0.5 5,664,134 + -0.8 5,664,142 - -3.0 5,664,142 - +0.2 5,664,142 - +0.1 5,664,142 - -1.2 5,664,142 - -0.7 5,664,142 - -0.7 5,664,142 - -0.8 5,664,142 - -0.5 5,664,142 - -1.1 5,664,147 + -1.4 5,664,221 - BWI76_RS27290 0.14 -1.2 5,664,223 + BWI76_RS27290 0.14 +0.7 5,664,223 + BWI76_RS27290 0.14 -1.8 5,664,237 + BWI76_RS27290 0.15 -1.0 5,664,238 - BWI76_RS27290 0.16 -1.5 5,664,242 + BWI76_RS27290 0.16 -1.7 5,664,245 - BWI76_RS27290 0.16 -2.4 5,664,245 - BWI76_RS27290 0.16 -1.1 5,664,260 - BWI76_RS27290 0.18 -0.6 5,664,269 + BWI76_RS27290 0.19 -0.5 5,664,269 + BWI76_RS27290 0.19 -0.3 5,664,277 - BWI76_RS27290 0.20 -2.3 5,664,380 + BWI76_RS27290 0.30 -0.7 5,664,388 - BWI76_RS27290 0.31 -0.2 5,664,694 - BWI76_RS27290 0.63 -1.9 5,664,744 - BWI76_RS27290 0.68 -0.4 5,664,744 - +0.4 5,664,802 + BWI76_RS27290 0.74 -2.3 5,664,802 + BWI76_RS27290 0.74 -0.9 5,665,002 + -1.7 5,665,078 + -0.3 5,665,589 + BWI76_RS27295 0.40 -0.3
Or see this region's nucleotide sequence