Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24780 and BWI76_RS24785 are separated by 126 nucleotides BWI76_RS24785 and BWI76_RS24790 are separated by 37 nucleotides BWI76_RS24790 and BWI76_RS24795 are separated by 104 nucleotides
BWI76_RS24780: BWI76_RS24780 - glutathione-dependent reductase, at 5,165,351 to 5,166,337
_RS24780
BWI76_RS24785: BWI76_RS24785 - DUF805 domain-containing protein, at 5,166,464 to 5,166,832
_RS24785
BWI76_RS24790: BWI76_RS24790 - LysR family transcriptional regulator, at 5,166,870 to 5,167,766
_RS24790
BWI76_RS24795: BWI76_RS24795 - hypothetical protein, at 5,167,871 to 5,168,572
_RS24795
Position (kb) 5166
5167
5168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 5165.914 kb on - strand, within BWI76_RS24780 at 5165.925 kb on - strand, within BWI76_RS24780 at 5165.952 kb on + strand, within BWI76_RS24780 at 5166.053 kb on - strand, within BWI76_RS24780 at 5166.083 kb on + strand, within BWI76_RS24780 at 5166.084 kb on - strand, within BWI76_RS24780 at 5166.086 kb on - strand, within BWI76_RS24780 at 5166.188 kb on - strand, within BWI76_RS24780 at 5166.246 kb on + strand at 5166.326 kb on + strand at 5166.326 kb on + strand at 5166.461 kb on + strand at 5166.469 kb on - strand at 5166.552 kb on + strand, within BWI76_RS24785 at 5166.644 kb on - strand, within BWI76_RS24785 at 5166.674 kb on - strand, within BWI76_RS24785 at 5166.700 kb on + strand, within BWI76_RS24785 at 5166.707 kb on + strand, within BWI76_RS24785 at 5166.831 kb on + strand at 5166.921 kb on - strand at 5166.923 kb on + strand at 5166.923 kb on + strand at 5166.925 kb on + strand at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.982 kb on - strand, within BWI76_RS24790 at 5167.007 kb on - strand, within BWI76_RS24790 at 5167.014 kb on - strand, within BWI76_RS24790 at 5167.055 kb on - strand, within BWI76_RS24790 at 5167.096 kb on - strand, within BWI76_RS24790 at 5167.340 kb on + strand, within BWI76_RS24790 at 5167.340 kb on + strand, within BWI76_RS24790 at 5167.340 kb on + strand at 5167.343 kb on - strand, within BWI76_RS24790 at 5167.348 kb on - strand, within BWI76_RS24790 at 5167.360 kb on - strand, within BWI76_RS24790 at 5167.441 kb on - strand, within BWI76_RS24790 at 5167.549 kb on + strand, within BWI76_RS24790 at 5167.653 kb on - strand, within BWI76_RS24790 at 5167.653 kb on - strand, within BWI76_RS24790 at 5167.653 kb on - strand, within BWI76_RS24790 at 5167.653 kb on - strand, within BWI76_RS24790 at 5167.897 kb on - strand at 5167.938 kb on + strand at 5168.156 kb on - strand, within BWI76_RS24795 at 5168.325 kb on + strand, within BWI76_RS24795 at 5168.391 kb on - strand, within BWI76_RS24795 at 5168.509 kb on + strand at 5168.586 kb on - strand at 5168.589 kb on - strand at 5168.655 kb on - strand at 5168.695 kb on - strand at 5168.697 kb on + strand at 5168.697 kb on + strand at 5168.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 5,165,914 - BWI76_RS24780 0.57 +0.8 5,165,925 - BWI76_RS24780 0.58 +0.5 5,165,952 + BWI76_RS24780 0.61 -0.2 5,166,053 - BWI76_RS24780 0.71 -0.2 5,166,083 + BWI76_RS24780 0.74 -0.3 5,166,084 - BWI76_RS24780 0.74 -0.6 5,166,086 - BWI76_RS24780 0.74 +0.2 5,166,188 - BWI76_RS24780 0.85 +1.0 5,166,246 + -0.1 5,166,326 + -0.1 5,166,326 + -0.1 5,166,461 + -1.1 5,166,469 - -0.2 5,166,552 + BWI76_RS24785 0.24 +0.4 5,166,644 - BWI76_RS24785 0.49 -0.4 5,166,674 - BWI76_RS24785 0.57 +0.2 5,166,700 + BWI76_RS24785 0.64 +0.4 5,166,707 + BWI76_RS24785 0.66 +1.6 5,166,831 + -3.7 5,166,921 - +7.6 5,166,923 + -0.2 5,166,923 + -0.4 5,166,925 + +1.5 5,166,977 - BWI76_RS24790 0.12 +0.3 5,166,977 - BWI76_RS24790 0.12 +0.2 5,166,982 - BWI76_RS24790 0.12 -0.5 5,167,007 - BWI76_RS24790 0.15 -0.2 5,167,014 - BWI76_RS24790 0.16 -0.2 5,167,055 - BWI76_RS24790 0.21 +0.6 5,167,096 - BWI76_RS24790 0.25 +1.8 5,167,340 + BWI76_RS24790 0.52 +0.6 5,167,340 + BWI76_RS24790 0.52 +1.1 5,167,340 + +0.7 5,167,343 - BWI76_RS24790 0.53 -1.1 5,167,348 - BWI76_RS24790 0.53 +1.0 5,167,360 - BWI76_RS24790 0.55 +8.3 5,167,441 - BWI76_RS24790 0.64 -0.3 5,167,549 + BWI76_RS24790 0.76 -0.2 5,167,653 - BWI76_RS24790 0.87 +0.5 5,167,653 - BWI76_RS24790 0.87 -1.6 5,167,653 - BWI76_RS24790 0.87 -2.0 5,167,653 - BWI76_RS24790 0.87 -0.7 5,167,897 - -1.0 5,167,938 + +0.8 5,168,156 - BWI76_RS24795 0.41 -0.5 5,168,325 + BWI76_RS24795 0.65 +0.0 5,168,391 - BWI76_RS24795 0.74 -0.2 5,168,509 + -1.1 5,168,586 - +0.3 5,168,589 - -1.8 5,168,655 - -0.7 5,168,695 - +0.1 5,168,697 + -0.1 5,168,697 + +0.1 5,168,759 + -0.8
Or see this region's nucleotide sequence