Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23210 and BWI76_RS23215 are separated by 17 nucleotides BWI76_RS23215 and BWI76_RS23220 are separated by 227 nucleotides
BWI76_RS23210: BWI76_RS23210 - threonine-phosphate decarboxylase, at 4,834,503 to 4,835,582
_RS23210
BWI76_RS23215: BWI76_RS23215 - N-acetylmuramoyl-L-alanine amidase, at 4,835,600 to 4,836,853
_RS23215
BWI76_RS23220: BWI76_RS23220 - amino-acid N-acetyltransferase, at 4,837,081 to 4,838,412
_RS23220
Position (kb)
4835
4836
4837 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9 at 4834.697 kb on + strand, within BWI76_RS23210 at 4834.701 kb on + strand, within BWI76_RS23210 at 4835.216 kb on + strand, within BWI76_RS23210 at 4835.408 kb on + strand, within BWI76_RS23210 at 4835.566 kb on + strand at 4835.602 kb on + strand at 4835.665 kb on - strand at 4835.717 kb on - strand at 4835.733 kb on + strand, within BWI76_RS23215 at 4835.954 kb on + strand, within BWI76_RS23215 at 4835.969 kb on - strand, within BWI76_RS23215 at 4836.066 kb on + strand, within BWI76_RS23215 at 4836.246 kb on + strand, within BWI76_RS23215 at 4836.329 kb on + strand, within BWI76_RS23215 at 4836.364 kb on - strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.499 kb on + strand, within BWI76_RS23215 at 4836.903 kb on + strand at 4836.923 kb on + strand at 4837.004 kb on + strand at 4837.458 kb on - strand, within BWI76_RS23220 at 4837.462 kb on - strand, within BWI76_RS23220 at 4837.491 kb on + strand, within BWI76_RS23220 at 4837.491 kb on + strand, within BWI76_RS23220 at 4837.499 kb on - strand, within BWI76_RS23220 at 4837.499 kb on - strand, within BWI76_RS23220 at 4837.631 kb on + strand, within BWI76_RS23220 at 4837.644 kb on - strand, within BWI76_RS23220
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 4,834,697 + BWI76_RS23210 0.18 -0.1 4,834,701 + BWI76_RS23210 0.18 -0.3 4,835,216 + BWI76_RS23210 0.66 +0.1 4,835,408 + BWI76_RS23210 0.84 -0.7 4,835,566 + +0.3 4,835,602 + +0.2 4,835,665 - -1.4 4,835,717 - +7.0 4,835,733 + BWI76_RS23215 0.11 +0.8 4,835,954 + BWI76_RS23215 0.28 -1.1 4,835,969 - BWI76_RS23215 0.29 -0.8 4,836,066 + BWI76_RS23215 0.37 -0.3 4,836,246 + BWI76_RS23215 0.52 +9.2 4,836,329 + BWI76_RS23215 0.58 -0.4 4,836,364 - BWI76_RS23215 0.61 +0.4 4,836,448 + BWI76_RS23215 0.68 +0.9 4,836,448 + BWI76_RS23215 0.68 -0.1 4,836,499 + BWI76_RS23215 0.72 +0.6 4,836,903 + +0.3 4,836,923 + -0.0 4,837,004 + -0.8 4,837,458 - BWI76_RS23220 0.28 -0.9 4,837,462 - BWI76_RS23220 0.29 -0.2 4,837,491 + BWI76_RS23220 0.31 +0.6 4,837,491 + BWI76_RS23220 0.31 +0.1 4,837,499 - BWI76_RS23220 0.31 -0.1 4,837,499 - BWI76_RS23220 0.31 +0.3 4,837,631 + BWI76_RS23220 0.41 +0.2 4,837,644 - BWI76_RS23220 0.42 -0.3
Or see this region's nucleotide sequence