Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16450

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16440 and BWI76_RS16445 are separated by 10 nucleotidesBWI76_RS16445 and BWI76_RS16450 overlap by 1 nucleotidesBWI76_RS16450 and BWI76_RS16455 overlap by 8 nucleotidesBWI76_RS16455 and BWI76_RS16460 are separated by 59 nucleotides BWI76_RS16440: BWI76_RS16440 - DUF1656 domain-containing protein, at 3,410,375 to 3,410,611 _RS16440 BWI76_RS16445: BWI76_RS16445 - auxiliary transporter membrane fusion protein, at 3,410,622 to 3,411,518 _RS16445 BWI76_RS16450: BWI76_RS16450 - fusaric acid resistance protein, at 3,411,518 to 3,413,542 _RS16450 BWI76_RS16455: BWI76_RS16455 - superoxide dismutase, at 3,413,535 to 3,414,056 _RS16455 BWI76_RS16460: BWI76_RS16460 - oxidoreductase, at 3,414,116 to 3,415,012 _RS16460 Position (kb) 3411 3412 3413 3414Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3410.839 kb on - strand, within BWI76_RS16445at 3411.160 kb on + strand, within BWI76_RS16445at 3411.200 kb on - strand, within BWI76_RS16445at 3411.515 kb on + strandat 3411.893 kb on + strand, within BWI76_RS16450at 3411.893 kb on + strand, within BWI76_RS16450at 3411.893 kb on + strand, within BWI76_RS16450at 3411.901 kb on - strand, within BWI76_RS16450at 3411.901 kb on - strand, within BWI76_RS16450at 3412.190 kb on + strand, within BWI76_RS16450at 3412.348 kb on - strand, within BWI76_RS16450at 3412.638 kb on - strand, within BWI76_RS16450at 3412.884 kb on + strand, within BWI76_RS16450at 3413.343 kb on - strandat 3413.361 kb on + strandat 3413.382 kb on + strandat 3413.390 kb on - strandat 3413.729 kb on + strand, within BWI76_RS16455at 3413.749 kb on + strand, within BWI76_RS16455at 3414.262 kb on + strand, within BWI76_RS16460at 3414.272 kb on - strand, within BWI76_RS16460

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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3,410,839 - BWI76_RS16445 0.24 -0.6
3,411,160 + BWI76_RS16445 0.60 +2.7
3,411,200 - BWI76_RS16445 0.64 +0.3
3,411,515 + -0.6
3,411,893 + BWI76_RS16450 0.19 -2.1
3,411,893 + BWI76_RS16450 0.19 +0.4
3,411,893 + BWI76_RS16450 0.19 +0.3
3,411,901 - BWI76_RS16450 0.19 +0.2
3,411,901 - BWI76_RS16450 0.19 +1.9
3,412,190 + BWI76_RS16450 0.33 -0.7
3,412,348 - BWI76_RS16450 0.41 -0.4
3,412,638 - BWI76_RS16450 0.55 +6.7
3,412,884 + BWI76_RS16450 0.67 +0.1
3,413,343 - -0.9
3,413,361 + +1.0
3,413,382 + +0.1
3,413,390 - +0.1
3,413,729 + BWI76_RS16455 0.37 -0.6
3,413,749 + BWI76_RS16455 0.41 +0.4
3,414,262 + BWI76_RS16460 0.16 -0.3
3,414,272 - BWI76_RS16460 0.17 -0.3

Or see this region's nucleotide sequence