Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11810

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11805 and BWI76_RS11810 are separated by 313 nucleotidesBWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotidesBWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotides BWI76_RS11805: BWI76_RS11805 - hypothetical protein, at 2,483,314 to 2,484,057 _RS11805 BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009 _RS11810 BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352 _RS11815 BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271 _RS11820 Position (kb) 2484 2485 2486Strain fitness (log2 ratio) -1 0 1at 2483.407 kb on - strand, within BWI76_RS11805at 2483.509 kb on + strand, within BWI76_RS11805at 2483.919 kb on + strand, within BWI76_RS11805at 2483.952 kb on - strand, within BWI76_RS11805at 2484.066 kb on - strandat 2484.120 kb on + strandat 2484.126 kb on - strandat 2484.197 kb on + strandat 2484.323 kb on + strandat 2484.521 kb on - strand, within BWI76_RS11810at 2484.588 kb on + strand, within BWI76_RS11810at 2484.801 kb on + strand, within BWI76_RS11810at 2485.030 kb on + strandat 2485.279 kb on + strand, within BWI76_RS11815at 2485.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,483,407 - BWI76_RS11805 0.12 -0.3
2,483,509 + BWI76_RS11805 0.26 +0.5
2,483,919 + BWI76_RS11805 0.81 +0.5
2,483,952 - BWI76_RS11805 0.86 -0.1
2,484,066 - +0.3
2,484,120 + -1.7
2,484,126 - -1.1
2,484,197 + -0.3
2,484,323 + -0.5
2,484,521 - BWI76_RS11810 0.23 -1.4
2,484,588 + BWI76_RS11810 0.34 -0.7
2,484,801 + BWI76_RS11810 0.67 -1.5
2,485,030 + +0.4
2,485,279 + BWI76_RS11815 0.70 +0.3
2,485,498 - +0.1

Or see this region's nucleotide sequence