Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26730 and BWI76_RS26735 are separated by 271 nucleotides BWI76_RS26735 and BWI76_RS26740 are separated by 49 nucleotides
BWI76_RS26730: BWI76_RS26730 - inner membrane protein YhjD, at 5,534,723 to 5,535,754
_RS26730
BWI76_RS26735: BWI76_RS26735 - MFS transporter, at 5,536,026 to 5,537,348
_RS26735
BWI76_RS26740: BWI76_RS26740 - AsmA family protein, at 5,537,398 to 5,539,449
_RS26740
Position (kb) 5536
5537
5538 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.247 kb on - strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.336 kb on - strand, within BWI76_RS26730 at 5535.388 kb on + strand, within BWI76_RS26730 at 5535.412 kb on + strand, within BWI76_RS26730 at 5535.536 kb on + strand, within BWI76_RS26730 at 5535.635 kb on + strand, within BWI76_RS26730 at 5535.672 kb on + strand at 5535.682 kb on + strand at 5535.682 kb on + strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.743 kb on + strand at 5535.744 kb on - strand at 5535.840 kb on + strand at 5535.847 kb on - strand at 5535.980 kb on + strand at 5536.029 kb on - strand at 5536.068 kb on + strand at 5536.109 kb on + strand at 5536.117 kb on - strand at 5536.256 kb on + strand, within BWI76_RS26735 at 5536.406 kb on + strand, within BWI76_RS26735 at 5536.668 kb on - strand, within BWI76_RS26735 at 5536.727 kb on + strand, within BWI76_RS26735 at 5536.789 kb on + strand, within BWI76_RS26735 at 5536.822 kb on - strand, within BWI76_RS26735 at 5536.822 kb on - strand, within BWI76_RS26735 at 5536.984 kb on + strand, within BWI76_RS26735 at 5536.996 kb on + strand, within BWI76_RS26735 at 5537.000 kb on - strand, within BWI76_RS26735 at 5537.004 kb on - strand, within BWI76_RS26735 at 5537.014 kb on + strand, within BWI76_RS26735 at 5537.097 kb on - strand at 5537.277 kb on - strand at 5537.350 kb on - strand at 5537.452 kb on - strand at 5537.461 kb on - strand at 5537.510 kb on - strand at 5537.615 kb on + strand, within BWI76_RS26740 at 5537.904 kb on - strand, within BWI76_RS26740 at 5537.934 kb on + strand, within BWI76_RS26740 at 5538.058 kb on + strand, within BWI76_RS26740 at 5538.122 kb on + strand, within BWI76_RS26740 at 5538.156 kb on - strand at 5538.179 kb on - strand, within BWI76_RS26740 at 5538.293 kb on + strand, within BWI76_RS26740 at 5538.293 kb on + strand, within BWI76_RS26740
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,535,139 + BWI76_RS26730 0.40 +1.0 5,535,139 + BWI76_RS26730 0.40 +1.6 5,535,247 - BWI76_RS26730 0.51 +0.3 5,535,328 + BWI76_RS26730 0.59 +0.1 5,535,328 + BWI76_RS26730 0.59 -0.8 5,535,336 - BWI76_RS26730 0.59 -0.3 5,535,388 + BWI76_RS26730 0.64 -0.8 5,535,412 + BWI76_RS26730 0.67 +1.0 5,535,536 + BWI76_RS26730 0.79 -0.7 5,535,635 + BWI76_RS26730 0.88 -1.4 5,535,672 + +0.5 5,535,682 + +0.0 5,535,682 + +0.0 5,535,690 - -1.3 5,535,690 - -1.6 5,535,690 - +1.4 5,535,690 - +0.0 5,535,690 - -1.5 5,535,690 - -0.2 5,535,690 - +1.7 5,535,690 - -0.3 5,535,743 + +0.8 5,535,744 - +1.4 5,535,840 + -1.2 5,535,847 - +0.4 5,535,980 + -0.1 5,536,029 - +2.4 5,536,068 + +0.4 5,536,109 + -1.3 5,536,117 - -2.0 5,536,256 + BWI76_RS26735 0.17 -0.8 5,536,406 + BWI76_RS26735 0.29 -1.9 5,536,668 - BWI76_RS26735 0.49 -0.3 5,536,727 + BWI76_RS26735 0.53 -0.1 5,536,789 + BWI76_RS26735 0.58 +0.0 5,536,822 - BWI76_RS26735 0.60 -0.0 5,536,822 - BWI76_RS26735 0.60 -0.5 5,536,984 + BWI76_RS26735 0.72 -0.2 5,536,996 + BWI76_RS26735 0.73 -0.7 5,537,000 - BWI76_RS26735 0.74 -0.5 5,537,004 - BWI76_RS26735 0.74 -1.1 5,537,014 + BWI76_RS26735 0.75 -0.1 5,537,097 - +3.2 5,537,277 - -0.7 5,537,350 - -0.5 5,537,452 - -0.1 5,537,461 - -0.1 5,537,510 - -1.3 5,537,615 + BWI76_RS26740 0.11 -0.5 5,537,904 - BWI76_RS26740 0.25 +0.1 5,537,934 + BWI76_RS26740 0.26 -0.7 5,538,058 + BWI76_RS26740 0.32 +0.4 5,538,122 + BWI76_RS26740 0.35 -0.7 5,538,156 - -0.1 5,538,179 - BWI76_RS26740 0.38 +0.9 5,538,293 + BWI76_RS26740 0.44 +0.0 5,538,293 + BWI76_RS26740 0.44 +0.7
Or see this region's nucleotide sequence