Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24745 and BWI76_RS24750 are separated by 2 nucleotides BWI76_RS24750 and BWI76_RS24755 are separated by 150 nucleotides BWI76_RS24755 and BWI76_RS24760 are separated by 46 nucleotides BWI76_RS24760 and BWI76_RS24765 are separated by 2 nucleotides
BWI76_RS24745: BWI76_RS24745 - membrane protein, at 5,161,944 to 5,162,606
_RS24745
BWI76_RS24750: BWI76_RS24750 - membrane protein, at 5,162,609 to 5,162,992
_RS24750
BWI76_RS24755: BWI76_RS24755 - hypothetical protein, at 5,163,143 to 5,163,511
_RS24755
BWI76_RS24760: BWI76_RS24760 - membrane protein, at 5,163,558 to 5,163,863
_RS24760
BWI76_RS24765: BWI76_RS24765 - membrane protein, at 5,163,866 to 5,164,264
_RS24765
Position (kb) 5162
5163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5161.621 kb on - strand at 5161.652 kb on - strand at 5161.678 kb on + strand at 5161.688 kb on + strand at 5161.836 kb on - strand at 5161.903 kb on - strand at 5161.926 kb on + strand at 5161.964 kb on + strand at 5162.032 kb on - strand, within BWI76_RS24745 at 5162.100 kb on - strand, within BWI76_RS24745 at 5162.194 kb on + strand, within BWI76_RS24745 at 5162.238 kb on + strand, within BWI76_RS24745 at 5162.451 kb on + strand, within BWI76_RS24745 at 5162.648 kb on + strand, within BWI76_RS24750 at 5162.688 kb on - strand, within BWI76_RS24750 at 5162.743 kb on + strand, within BWI76_RS24750 at 5162.866 kb on - strand, within BWI76_RS24750 at 5162.982 kb on + strand at 5163.059 kb on - strand at 5163.069 kb on + strand at 5163.084 kb on + strand at 5163.105 kb on - strand at 5163.105 kb on - strand at 5163.133 kb on + strand at 5163.419 kb on - strand, within BWI76_RS24755 at 5163.489 kb on + strand at 5163.523 kb on + strand at 5163.917 kb on + strand, within BWI76_RS24765 at 5163.920 kb on - strand, within BWI76_RS24765 at 5163.927 kb on + strand, within BWI76_RS24765
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,161,621 - -0.5 5,161,652 - -0.3 5,161,678 + +1.4 5,161,688 + -1.3 5,161,836 - -1.4 5,161,903 - -0.8 5,161,926 + +0.3 5,161,964 + +1.3 5,162,032 - BWI76_RS24745 0.13 -0.4 5,162,100 - BWI76_RS24745 0.24 -2.0 5,162,194 + BWI76_RS24745 0.38 +0.6 5,162,238 + BWI76_RS24745 0.44 -0.7 5,162,451 + BWI76_RS24745 0.76 -0.4 5,162,648 + BWI76_RS24750 0.10 +0.3 5,162,688 - BWI76_RS24750 0.21 -0.2 5,162,743 + BWI76_RS24750 0.35 +2.6 5,162,866 - BWI76_RS24750 0.67 +0.1 5,162,982 + +0.8 5,163,059 - +0.5 5,163,069 + +1.1 5,163,084 + -1.0 5,163,105 - +0.4 5,163,105 - +0.1 5,163,133 + +0.9 5,163,419 - BWI76_RS24755 0.75 +0.3 5,163,489 + -0.6 5,163,523 + -1.4 5,163,917 + BWI76_RS24765 0.13 +0.6 5,163,920 - BWI76_RS24765 0.14 -0.4 5,163,927 + BWI76_RS24765 0.15 +0.2
Or see this region's nucleotide sequence