Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10015 and BWI76_RS10020 overlap by 4 nucleotides BWI76_RS10020 and BWI76_RS10025 overlap by 4 nucleotides
BWI76_RS10015: BWI76_RS10015 - putative outer membrane efflux protein, at 2,118,772 to 2,120,208
_RS10015
BWI76_RS10020: BWI76_RS10020 - ABC transporter, at 2,120,205 to 2,122,352
_RS10020
BWI76_RS10025: BWI76_RS10025 - secretion protein HlyD, at 2,122,349 to 2,123,554
_RS10025
Position (kb)
2120
2121
2122
2123 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2119.214 kb on - strand, within BWI76_RS10015 at 2119.251 kb on + strand, within BWI76_RS10015 at 2119.635 kb on + strand, within BWI76_RS10015 at 2120.046 kb on + strand, within BWI76_RS10015 at 2120.546 kb on - strand, within BWI76_RS10020 at 2120.776 kb on + strand, within BWI76_RS10020 at 2120.777 kb on + strand, within BWI76_RS10020 at 2120.792 kb on + strand, within BWI76_RS10020 at 2120.884 kb on - strand, within BWI76_RS10020 at 2120.925 kb on + strand, within BWI76_RS10020 at 2121.009 kb on - strand, within BWI76_RS10020 at 2121.036 kb on - strand, within BWI76_RS10020 at 2121.115 kb on + strand, within BWI76_RS10020 at 2121.562 kb on - strand, within BWI76_RS10020 at 2121.738 kb on + strand, within BWI76_RS10020 at 2121.837 kb on - strand, within BWI76_RS10020 at 2121.847 kb on - strand, within BWI76_RS10020 at 2121.978 kb on + strand, within BWI76_RS10020 at 2121.983 kb on + strand, within BWI76_RS10020 at 2122.252 kb on + strand at 2122.261 kb on + strand at 2122.269 kb on - strand at 2122.590 kb on + strand, within BWI76_RS10025 at 2122.624 kb on - strand, within BWI76_RS10025 at 2122.624 kb on - strand, within BWI76_RS10025 at 2122.888 kb on - strand, within BWI76_RS10025 at 2122.926 kb on + strand, within BWI76_RS10025 at 2122.934 kb on - strand, within BWI76_RS10025 at 2122.941 kb on + strand, within BWI76_RS10025 at 2122.949 kb on - strand, within BWI76_RS10025 at 2123.018 kb on - strand, within BWI76_RS10025 at 2123.023 kb on + strand, within BWI76_RS10025 at 2123.046 kb on - strand, within BWI76_RS10025 at 2123.052 kb on - strand, within BWI76_RS10025 at 2123.057 kb on - strand, within BWI76_RS10025 at 2123.065 kb on - strand, within BWI76_RS10025 at 2123.090 kb on + strand, within BWI76_RS10025 at 2123.090 kb on + strand, within BWI76_RS10025 at 2123.090 kb on + strand, within BWI76_RS10025 at 2123.097 kb on - strand, within BWI76_RS10025 at 2123.111 kb on + strand, within BWI76_RS10025 at 2123.111 kb on + strand, within BWI76_RS10025 at 2123.111 kb on + strand, within BWI76_RS10025 at 2123.119 kb on - strand, within BWI76_RS10025 at 2123.119 kb on - strand, within BWI76_RS10025 at 2123.119 kb on - strand, within BWI76_RS10025 at 2123.137 kb on + strand, within BWI76_RS10025 at 2123.154 kb on + strand, within BWI76_RS10025 at 2123.164 kb on + strand, within BWI76_RS10025 at 2123.169 kb on + strand, within BWI76_RS10025 at 2123.169 kb on + strand, within BWI76_RS10025 at 2123.169 kb on + strand, within BWI76_RS10025 at 2123.169 kb on + strand, within BWI76_RS10025 at 2123.169 kb on + strand, within BWI76_RS10025 at 2123.177 kb on - strand, within BWI76_RS10025 at 2123.177 kb on - strand, within BWI76_RS10025 at 2123.177 kb on - strand, within BWI76_RS10025 at 2123.214 kb on - strand, within BWI76_RS10025 at 2123.256 kb on - strand, within BWI76_RS10025 at 2123.324 kb on + strand, within BWI76_RS10025 at 2123.339 kb on - strand, within BWI76_RS10025 at 2123.348 kb on + strand, within BWI76_RS10025 at 2123.348 kb on + strand, within BWI76_RS10025 at 2123.348 kb on + strand, within BWI76_RS10025
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 2,119,214 - BWI76_RS10015 0.31 +0.4 2,119,251 + BWI76_RS10015 0.33 -0.4 2,119,635 + BWI76_RS10015 0.60 +0.7 2,120,046 + BWI76_RS10015 0.89 -0.2 2,120,546 - BWI76_RS10020 0.16 -0.4 2,120,776 + BWI76_RS10020 0.27 +0.8 2,120,777 + BWI76_RS10020 0.27 -0.1 2,120,792 + BWI76_RS10020 0.27 -0.2 2,120,884 - BWI76_RS10020 0.32 -0.1 2,120,925 + BWI76_RS10020 0.34 +0.1 2,121,009 - BWI76_RS10020 0.37 +1.0 2,121,036 - BWI76_RS10020 0.39 +0.1 2,121,115 + BWI76_RS10020 0.42 -0.2 2,121,562 - BWI76_RS10020 0.63 -0.9 2,121,738 + BWI76_RS10020 0.71 +0.1 2,121,837 - BWI76_RS10020 0.76 -1.9 2,121,847 - BWI76_RS10020 0.76 +0.4 2,121,978 + BWI76_RS10020 0.83 -0.1 2,121,983 + BWI76_RS10020 0.83 -0.3 2,122,252 + +1.4 2,122,261 + +0.8 2,122,269 - -0.1 2,122,590 + BWI76_RS10025 0.20 +0.3 2,122,624 - BWI76_RS10025 0.23 +0.1 2,122,624 - BWI76_RS10025 0.23 -0.3 2,122,888 - BWI76_RS10025 0.45 +0.8 2,122,926 + BWI76_RS10025 0.48 +0.0 2,122,934 - BWI76_RS10025 0.49 +4.1 2,122,941 + BWI76_RS10025 0.49 +0.2 2,122,949 - BWI76_RS10025 0.50 -1.2 2,123,018 - BWI76_RS10025 0.55 -0.0 2,123,023 + BWI76_RS10025 0.56 -1.0 2,123,046 - BWI76_RS10025 0.58 +0.5 2,123,052 - BWI76_RS10025 0.58 -0.3 2,123,057 - BWI76_RS10025 0.59 -0.3 2,123,065 - BWI76_RS10025 0.59 +1.5 2,123,090 + BWI76_RS10025 0.61 -0.9 2,123,090 + BWI76_RS10025 0.61 +1.9 2,123,090 + BWI76_RS10025 0.61 +0.3 2,123,097 - BWI76_RS10025 0.62 -0.7 2,123,111 + BWI76_RS10025 0.63 +0.1 2,123,111 + BWI76_RS10025 0.63 -0.5 2,123,111 + BWI76_RS10025 0.63 -1.0 2,123,119 - BWI76_RS10025 0.64 -1.6 2,123,119 - BWI76_RS10025 0.64 -0.2 2,123,119 - BWI76_RS10025 0.64 -1.9 2,123,137 + BWI76_RS10025 0.65 +0.8 2,123,154 + BWI76_RS10025 0.67 +0.8 2,123,164 + BWI76_RS10025 0.68 -0.4 2,123,169 + BWI76_RS10025 0.68 -0.5 2,123,169 + BWI76_RS10025 0.68 +0.5 2,123,169 + BWI76_RS10025 0.68 -0.6 2,123,169 + BWI76_RS10025 0.68 +0.6 2,123,169 + BWI76_RS10025 0.68 +0.4 2,123,177 - BWI76_RS10025 0.69 +0.7 2,123,177 - BWI76_RS10025 0.69 +0.3 2,123,177 - BWI76_RS10025 0.69 -0.1 2,123,214 - BWI76_RS10025 0.72 +1.2 2,123,256 - BWI76_RS10025 0.75 +0.2 2,123,324 + BWI76_RS10025 0.81 -0.2 2,123,339 - BWI76_RS10025 0.82 +1.3 2,123,348 + BWI76_RS10025 0.83 +0.6 2,123,348 + BWI76_RS10025 0.83 +0.3 2,123,348 + BWI76_RS10025 0.83 -0.1
Or see this region's nucleotide sequence