Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23625 and BWI76_RS23630 are separated by 166 nucleotides BWI76_RS23630 and BWI76_RS23635 are separated by 40 nucleotides
BWI76_RS23625: BWI76_RS23625 - helix-turn-helix transcriptional regulator, at 4,926,707 to 4,929,418
_RS23625
BWI76_RS23630: BWI76_RS23630 - acetoin(diacetyl) reductase, at 4,929,585 to 4,930,364
_RS23630
BWI76_RS23635: BWI76_RS23635 - MFS transporter, at 4,930,405 to 4,931,958
_RS23635
Position (kb) 4929
4930
4931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4928.587 kb on + strand, within BWI76_RS23625 at 4928.777 kb on + strand, within BWI76_RS23625 at 4928.786 kb on + strand, within BWI76_RS23625 at 4928.833 kb on - strand, within BWI76_RS23625 at 4928.838 kb on - strand, within BWI76_RS23625 at 4928.839 kb on - strand, within BWI76_RS23625 at 4929.058 kb on + strand, within BWI76_RS23625 at 4929.166 kb on + strand at 4929.235 kb on + strand at 4929.356 kb on + strand at 4929.431 kb on + strand at 4929.439 kb on - strand at 4929.574 kb on - strand at 4929.624 kb on + strand at 4929.788 kb on + strand, within BWI76_RS23630 at 4929.788 kb on + strand, within BWI76_RS23630 at 4929.788 kb on + strand, within BWI76_RS23630 at 4929.829 kb on + strand, within BWI76_RS23630 at 4930.286 kb on - strand, within BWI76_RS23630 at 4930.559 kb on + strand at 4930.597 kb on + strand, within BWI76_RS23635 at 4930.700 kb on - strand, within BWI76_RS23635 at 4930.714 kb on + strand, within BWI76_RS23635 at 4930.715 kb on - strand, within BWI76_RS23635 at 4930.805 kb on - strand, within BWI76_RS23635 at 4930.880 kb on + strand, within BWI76_RS23635 at 4930.982 kb on + strand, within BWI76_RS23635 at 4931.009 kb on - strand, within BWI76_RS23635 at 4931.093 kb on + strand, within BWI76_RS23635 at 4931.106 kb on - strand, within BWI76_RS23635 at 4931.156 kb on + strand, within BWI76_RS23635 at 4931.169 kb on - strand, within BWI76_RS23635 at 4931.204 kb on - strand, within BWI76_RS23635
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,928,587 + BWI76_RS23625 0.69 -0.7 4,928,777 + BWI76_RS23625 0.76 +5.6 4,928,786 + BWI76_RS23625 0.77 +1.4 4,928,833 - BWI76_RS23625 0.78 +1.0 4,928,838 - BWI76_RS23625 0.79 -0.9 4,928,839 - BWI76_RS23625 0.79 +0.2 4,929,058 + BWI76_RS23625 0.87 -0.4 4,929,166 + +0.4 4,929,235 + -0.7 4,929,356 + +0.0 4,929,431 + +2.0 4,929,439 - +0.0 4,929,574 - -3.3 4,929,624 + -0.1 4,929,788 + BWI76_RS23630 0.26 -0.6 4,929,788 + BWI76_RS23630 0.26 -1.3 4,929,788 + BWI76_RS23630 0.26 +0.0 4,929,829 + BWI76_RS23630 0.31 +0.7 4,930,286 - BWI76_RS23630 0.90 -0.9 4,930,559 + +0.0 4,930,597 + BWI76_RS23635 0.12 -1.1 4,930,700 - BWI76_RS23635 0.19 +0.4 4,930,714 + BWI76_RS23635 0.20 -0.2 4,930,715 - BWI76_RS23635 0.20 +0.4 4,930,805 - BWI76_RS23635 0.26 -0.5 4,930,880 + BWI76_RS23635 0.31 -0.1 4,930,982 + BWI76_RS23635 0.37 +0.2 4,931,009 - BWI76_RS23635 0.39 +3.3 4,931,093 + BWI76_RS23635 0.44 +0.1 4,931,106 - BWI76_RS23635 0.45 +0.2 4,931,156 + BWI76_RS23635 0.48 +0.9 4,931,169 - BWI76_RS23635 0.49 -0.1 4,931,204 - BWI76_RS23635 0.51 -0.6
Or see this region's nucleotide sequence