Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23595 and BWI76_RS23600 are separated by 11 nucleotides BWI76_RS23600 and BWI76_RS23605 are separated by 269 nucleotides BWI76_RS23605 and BWI76_RS23610 are separated by 6 nucleotides BWI76_RS23610 and BWI76_RS23615 are separated by 9 nucleotides
BWI76_RS23595: BWI76_RS23595 - N-acetyltransferase, at 4,921,191 to 4,921,463
_RS23595
BWI76_RS23600: BWI76_RS23600 - hypothetical protein, at 4,921,475 to 4,921,705
_RS23600
BWI76_RS23605: BWI76_RS23605 - hypothetical protein, at 4,921,975 to 4,922,247
_RS23605
BWI76_RS23610: BWI76_RS23610 - multidrug transporter subunit MdtN, at 4,922,254 to 4,923,282
_RS23610
BWI76_RS23615: BWI76_RS23615 - multidrug transporter, at 4,923,292 to 4,925,235
_RS23615
Position (kb) 4922
4923
4924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4921.269 kb on - strand, within BWI76_RS23595 at 4921.328 kb on + strand, within BWI76_RS23595 at 4921.328 kb on - strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.363 kb on + strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.371 kb on - strand, within BWI76_RS23595 at 4921.378 kb on + strand, within BWI76_RS23595 at 4921.448 kb on - strand at 4921.490 kb on + strand at 4921.497 kb on - strand at 4921.498 kb on - strand, within BWI76_RS23600 at 4921.502 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.511 kb on + strand, within BWI76_RS23600 at 4921.516 kb on + strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.519 kb on - strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.521 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.522 kb on + strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.529 kb on - strand, within BWI76_RS23600 at 4921.531 kb on - strand, within BWI76_RS23600 at 4921.535 kb on + strand, within BWI76_RS23600 at 4921.543 kb on - strand, within BWI76_RS23600 at 4921.546 kb on + strand, within BWI76_RS23600 at 4921.559 kb on + strand, within BWI76_RS23600 at 4921.588 kb on + strand, within BWI76_RS23600 at 4921.589 kb on - strand, within BWI76_RS23600 at 4921.616 kb on - strand, within BWI76_RS23600 at 4921.627 kb on - strand, within BWI76_RS23600 at 4921.635 kb on + strand, within BWI76_RS23600 at 4921.643 kb on - strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.665 kb on + strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.673 kb on - strand, within BWI76_RS23600 at 4921.750 kb on + strand at 4921.758 kb on - strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.760 kb on + strand at 4921.768 kb on - strand at 4921.839 kb on + strand at 4921.891 kb on + strand at 4921.893 kb on + strand at 4921.901 kb on - strand at 4921.930 kb on + strand at 4921.938 kb on - strand at 4921.938 kb on - strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.945 kb on + strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.953 kb on - strand at 4921.960 kb on + strand at 4921.985 kb on - strand at 4922.009 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.037 kb on - strand, within BWI76_RS23605 at 4922.050 kb on - strand, within BWI76_RS23605 at 4922.062 kb on + strand, within BWI76_RS23605 at 4922.064 kb on + strand, within BWI76_RS23605 at 4922.126 kb on - strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.129 kb on + strand, within BWI76_RS23605 at 4922.137 kb on - strand, within BWI76_RS23605 at 4922.143 kb on - strand, within BWI76_RS23605 at 4922.178 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.179 kb on + strand, within BWI76_RS23605 at 4922.189 kb on - strand, within BWI76_RS23605 at 4922.202 kb on - strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.218 kb on + strand, within BWI76_RS23605 at 4922.235 kb on - strand at 4922.244 kb on + strand at 4922.257 kb on + strand at 4922.259 kb on - strand at 4922.416 kb on - strand, within BWI76_RS23610 at 4922.484 kb on - strand, within BWI76_RS23610 at 4922.569 kb on - strand, within BWI76_RS23610 at 4922.773 kb on - strand, within BWI76_RS23610 at 4922.802 kb on - strand, within BWI76_RS23610 at 4922.893 kb on + strand, within BWI76_RS23610 at 4923.088 kb on - strand, within BWI76_RS23610 at 4923.307 kb on - strand at 4923.334 kb on + strand at 4923.374 kb on + strand at 4923.396 kb on + strand at 4923.408 kb on + strand at 4923.558 kb on - strand, within BWI76_RS23615 at 4923.605 kb on + strand, within BWI76_RS23615 at 4923.788 kb on + strand, within BWI76_RS23615 at 4923.859 kb on + strand, within BWI76_RS23615
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,921,269 - BWI76_RS23595 0.29 -0.4 4,921,328 + BWI76_RS23595 0.50 -0.1 4,921,328 - BWI76_RS23595 0.50 -1.0 4,921,363 + BWI76_RS23595 0.63 +1.0 4,921,363 + BWI76_RS23595 0.63 +0.3 4,921,363 + BWI76_RS23595 0.63 +0.7 4,921,363 + BWI76_RS23595 0.63 -0.3 4,921,371 - BWI76_RS23595 0.66 -0.9 4,921,371 - BWI76_RS23595 0.66 +0.1 4,921,378 + BWI76_RS23595 0.68 -0.5 4,921,448 - -1.2 4,921,490 + +1.8 4,921,497 - +0.9 4,921,498 - BWI76_RS23600 0.10 -0.3 4,921,502 + BWI76_RS23600 0.12 +0.5 4,921,511 + BWI76_RS23600 0.16 -0.7 4,921,511 + BWI76_RS23600 0.16 -0.2 4,921,511 + BWI76_RS23600 0.16 -0.1 4,921,511 + BWI76_RS23600 0.16 -0.3 4,921,511 + BWI76_RS23600 0.16 +1.0 4,921,516 + BWI76_RS23600 0.18 -0.2 4,921,519 - BWI76_RS23600 0.19 +0.3 4,921,519 - BWI76_RS23600 0.19 +0.1 4,921,519 - BWI76_RS23600 0.19 +0.3 4,921,519 - BWI76_RS23600 0.19 +0.0 4,921,519 - BWI76_RS23600 0.19 +0.3 4,921,519 - BWI76_RS23600 0.19 -0.3 4,921,521 + BWI76_RS23600 0.20 +0.8 4,921,521 + BWI76_RS23600 0.20 -0.1 4,921,521 + BWI76_RS23600 0.20 -1.3 4,921,521 + BWI76_RS23600 0.20 -2.2 4,921,521 + BWI76_RS23600 0.20 +0.5 4,921,522 + BWI76_RS23600 0.20 +0.7 4,921,522 + BWI76_RS23600 0.20 -0.3 4,921,529 - BWI76_RS23600 0.23 +0.2 4,921,529 - BWI76_RS23600 0.23 -0.7 4,921,529 - BWI76_RS23600 0.23 -1.3 4,921,529 - BWI76_RS23600 0.23 +0.3 4,921,529 - BWI76_RS23600 0.23 +0.9 4,921,531 - BWI76_RS23600 0.24 +0.4 4,921,535 + BWI76_RS23600 0.26 -0.6 4,921,543 - BWI76_RS23600 0.29 -0.1 4,921,546 + BWI76_RS23600 0.31 +0.3 4,921,559 + BWI76_RS23600 0.36 -0.7 4,921,588 + BWI76_RS23600 0.49 -0.6 4,921,589 - BWI76_RS23600 0.49 -0.1 4,921,616 - BWI76_RS23600 0.61 +2.6 4,921,627 - BWI76_RS23600 0.66 -0.0 4,921,635 + BWI76_RS23600 0.69 -1.4 4,921,643 - BWI76_RS23600 0.73 -0.1 4,921,665 + BWI76_RS23600 0.82 -1.4 4,921,665 + BWI76_RS23600 0.82 +0.5 4,921,665 + BWI76_RS23600 0.82 +0.0 4,921,665 + BWI76_RS23600 0.82 -0.7 4,921,673 - BWI76_RS23600 0.86 -0.8 4,921,673 - BWI76_RS23600 0.86 +0.6 4,921,750 + -1.2 4,921,758 - +1.1 4,921,760 + -0.7 4,921,760 + -0.8 4,921,760 + -0.6 4,921,768 - -0.4 4,921,839 + +0.5 4,921,891 + -0.9 4,921,893 + -1.1 4,921,901 - -0.1 4,921,930 + +2.3 4,921,938 - -0.1 4,921,938 - +0.2 4,921,945 + +2.9 4,921,945 + -1.3 4,921,945 + +0.6 4,921,953 - +0.2 4,921,953 - +0.2 4,921,953 - -0.3 4,921,953 - +0.7 4,921,960 + -1.5 4,921,985 - +0.4 4,922,009 - BWI76_RS23605 0.12 +0.1 4,922,037 - BWI76_RS23605 0.23 +0.7 4,922,037 - BWI76_RS23605 0.23 +0.3 4,922,050 - BWI76_RS23605 0.27 +0.0 4,922,062 + BWI76_RS23605 0.32 +0.7 4,922,064 + BWI76_RS23605 0.33 -0.5 4,922,126 - BWI76_RS23605 0.55 -0.3 4,922,129 + BWI76_RS23605 0.56 -1.2 4,922,129 + BWI76_RS23605 0.56 +0.1 4,922,129 + BWI76_RS23605 0.56 +0.3 4,922,137 - BWI76_RS23605 0.59 +1.9 4,922,143 - BWI76_RS23605 0.62 -1.1 4,922,178 + BWI76_RS23605 0.74 +0.3 4,922,179 + BWI76_RS23605 0.75 -0.9 4,922,179 + BWI76_RS23605 0.75 +0.8 4,922,189 - BWI76_RS23605 0.78 +0.4 4,922,202 - BWI76_RS23605 0.83 -1.9 4,922,218 + BWI76_RS23605 0.89 +0.5 4,922,218 + BWI76_RS23605 0.89 -2.8 4,922,235 - -2.6 4,922,244 + -2.4 4,922,257 + -1.8 4,922,259 - -0.4 4,922,416 - BWI76_RS23610 0.16 -0.3 4,922,484 - BWI76_RS23610 0.22 +3.5 4,922,569 - BWI76_RS23610 0.31 +6.5 4,922,773 - BWI76_RS23610 0.50 +0.5 4,922,802 - BWI76_RS23610 0.53 -0.3 4,922,893 + BWI76_RS23610 0.62 +0.0 4,923,088 - BWI76_RS23610 0.81 +0.5 4,923,307 - -1.0 4,923,334 + +0.4 4,923,374 + +0.1 4,923,396 + +0.0 4,923,408 + +1.4 4,923,558 - BWI76_RS23615 0.14 +0.9 4,923,605 + BWI76_RS23615 0.16 -0.9 4,923,788 + BWI76_RS23615 0.26 -1.9 4,923,859 + BWI76_RS23615 0.29 +0.4
Or see this region's nucleotide sequence