Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16365

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16355 and BWI76_RS16360 overlap by 1 nucleotidesBWI76_RS16360 and BWI76_RS16365 overlap by 8 nucleotidesBWI76_RS16365 and BWI76_RS16370 are separated by 0 nucleotides BWI76_RS16355: BWI76_RS16355 - electron transport complex subunit A, at 3,393,602 to 3,394,183 _RS16355 BWI76_RS16360: BWI76_RS16360 - electron transport complex subunit RsxB, at 3,394,183 to 3,394,761 _RS16360 BWI76_RS16365: BWI76_RS16365 - electron transport complex subunit RsxC, at 3,394,754 to 3,396,814 _RS16365 BWI76_RS16370: BWI76_RS16370 - electron transport complex subunit D, at 3,396,815 to 3,397,867 _RS16370 Position (kb) 3394 3395 3396 3397Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3393.970 kb on + strand, within BWI76_RS16355at 3394.192 kb on + strandat 3394.369 kb on - strand, within BWI76_RS16360at 3394.890 kb on + strandat 3395.046 kb on - strand, within BWI76_RS16365at 3395.263 kb on - strand, within BWI76_RS16365at 3395.451 kb on + strand, within BWI76_RS16365at 3395.459 kb on - strand, within BWI76_RS16365at 3395.459 kb on - strandat 3395.750 kb on - strand, within BWI76_RS16365at 3396.157 kb on - strand, within BWI76_RS16365at 3396.239 kb on + strand, within BWI76_RS16365at 3396.242 kb on - strand, within BWI76_RS16365at 3396.464 kb on + strand, within BWI76_RS16365at 3396.730 kb on - strandat 3396.996 kb on + strand, within BWI76_RS16370at 3396.996 kb on + strand, within BWI76_RS16370at 3397.308 kb on + strand, within BWI76_RS16370at 3397.364 kb on + strand, within BWI76_RS16370at 3397.622 kb on + strand, within BWI76_RS16370

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,393,970 + BWI76_RS16355 0.63 -0.6
3,394,192 + +0.4
3,394,369 - BWI76_RS16360 0.32 -4.3
3,394,890 + -2.8
3,395,046 - BWI76_RS16365 0.14 +1.2
3,395,263 - BWI76_RS16365 0.25 +1.3
3,395,451 + BWI76_RS16365 0.34 +6.0
3,395,459 - BWI76_RS16365 0.34 -0.4
3,395,459 - +0.5
3,395,750 - BWI76_RS16365 0.48 -0.2
3,396,157 - BWI76_RS16365 0.68 -2.9
3,396,239 + BWI76_RS16365 0.72 -0.3
3,396,242 - BWI76_RS16365 0.72 -0.1
3,396,464 + BWI76_RS16365 0.83 +0.6
3,396,730 - -0.5
3,396,996 + BWI76_RS16370 0.17 -0.6
3,396,996 + BWI76_RS16370 0.17 +0.2
3,397,308 + BWI76_RS16370 0.47 -0.0
3,397,364 + BWI76_RS16370 0.52 -0.3
3,397,622 + BWI76_RS16370 0.77 +2.8

Or see this region's nucleotide sequence