Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13705 and BWI76_RS13710 overlap by 1 nucleotides BWI76_RS13710 and BWI76_RS13715 are separated by 9 nucleotides BWI76_RS13715 and BWI76_RS13720 are separated by 9 nucleotides BWI76_RS13720 and BWI76_RS13725 overlap by 4 nucleotides
BWI76_RS13705: BWI76_RS13705 - Rieske (2Fe-2S) domain-containing protein, at 2,859,559 to 2,860,941
_RS13705
BWI76_RS13710: BWI76_RS13710 - benzoate 1,2-dioxygenase small subunit, at 2,860,941 to 2,861,426
_RS13710
BWI76_RS13715: BWI76_RS13715 - 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit, at 2,861,436 to 2,862,452
_RS13715
BWI76_RS13720: BWI76_RS13720 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 2,862,462 to 2,863,235
_RS13720
BWI76_RS13725: BWI76_RS13725 - aromatic amino acid exporter, at 2,863,232 to 2,864,110
_RS13725
Position (kb)
2861
2862
2863 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2860.680 kb on + strand, within BWI76_RS13705 at 2860.833 kb on + strand at 2860.933 kb on - strand at 2861.043 kb on + strand, within BWI76_RS13710 at 2861.065 kb on - strand, within BWI76_RS13710 at 2861.295 kb on - strand, within BWI76_RS13710 at 2861.316 kb on - strand, within BWI76_RS13710 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.740 kb on - strand, within BWI76_RS13715 at 2861.815 kb on - strand, within BWI76_RS13715 at 2861.902 kb on + strand, within BWI76_RS13715 at 2862.617 kb on - strand, within BWI76_RS13720 at 2862.897 kb on + strand, within BWI76_RS13720 at 2862.897 kb on + strand, within BWI76_RS13720 at 2862.949 kb on + strand at 2863.137 kb on - strand, within BWI76_RS13720 at 2863.254 kb on - strand at 2863.258 kb on + strand at 2863.322 kb on - strand, within BWI76_RS13725 at 2863.322 kb on - strand, within BWI76_RS13725 at 2863.424 kb on + strand, within BWI76_RS13725 at 2863.437 kb on + strand, within BWI76_RS13725
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 2,860,680 + BWI76_RS13705 0.81 -0.4 2,860,833 + -1.1 2,860,933 - -0.3 2,861,043 + BWI76_RS13710 0.21 -0.2 2,861,065 - BWI76_RS13710 0.26 -0.0 2,861,295 - BWI76_RS13710 0.73 +0.1 2,861,316 - BWI76_RS13710 0.77 -2.2 2,861,740 - BWI76_RS13715 0.30 +0.7 2,861,740 - BWI76_RS13715 0.30 +2.4 2,861,740 - BWI76_RS13715 0.30 +0.9 2,861,815 - BWI76_RS13715 0.37 +0.0 2,861,902 + BWI76_RS13715 0.46 +1.1 2,862,617 - BWI76_RS13720 0.20 -1.2 2,862,897 + BWI76_RS13720 0.56 +0.2 2,862,897 + BWI76_RS13720 0.56 -0.5 2,862,949 + +0.1 2,863,137 - BWI76_RS13720 0.87 +0.0 2,863,254 - +0.4 2,863,258 + -0.3 2,863,322 - BWI76_RS13725 0.10 -0.5 2,863,322 - BWI76_RS13725 0.10 -0.2 2,863,424 + BWI76_RS13725 0.22 -0.1 2,863,437 + BWI76_RS13725 0.23 -0.1
Or see this region's nucleotide sequence