Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11450

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11440 and BWI76_RS11445 are separated by 162 nucleotidesBWI76_RS11445 and BWI76_RS11450 are separated by 37 nucleotidesBWI76_RS11450 and BWI76_RS11455 are separated by 100 nucleotidesBWI76_RS11455 and BWI76_RS11460 overlap by 17 nucleotides BWI76_RS11440: BWI76_RS11440 - hypothetical protein, at 2,408,280 to 2,408,789 _RS11440 BWI76_RS11445: BWI76_RS11445 - hypothetical protein, at 2,408,952 to 2,409,644 _RS11445 BWI76_RS11450: BWI76_RS11450 - cyanate MFS transporter, at 2,409,682 to 2,410,866 _RS11450 BWI76_RS11455: BWI76_RS11455 - AraC family transcriptional regulator, at 2,410,967 to 2,411,758 _RS11455 BWI76_RS11460: BWI76_RS11460 - DUF441 family protein, at 2,411,742 to 2,412,188 _RS11460 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -2 -1 0 1at 2408.829 kb on - strandat 2408.949 kb on + strandat 2409.372 kb on - strand, within BWI76_RS11445at 2409.379 kb on + strand, within BWI76_RS11445at 2409.387 kb on - strand, within BWI76_RS11445at 2409.469 kb on + strand, within BWI76_RS11445at 2409.606 kb on - strandat 2410.009 kb on + strand, within BWI76_RS11450at 2410.017 kb on - strand, within BWI76_RS11450at 2410.579 kb on + strand, within BWI76_RS11450at 2410.592 kb on - strand, within BWI76_RS11450at 2410.592 kb on - strand, within BWI76_RS11450at 2410.623 kb on + strand, within BWI76_RS11450at 2410.726 kb on + strand, within BWI76_RS11450at 2410.837 kb on + strandat 2411.331 kb on + strand, within BWI76_RS11455at 2411.569 kb on - strand, within BWI76_RS11455at 2411.656 kb on - strand, within BWI76_RS11455at 2411.861 kb on + strand, within BWI76_RS11460

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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2,408,829 - +0.0
2,408,949 + +0.3
2,409,372 - BWI76_RS11445 0.61 -1.2
2,409,379 + BWI76_RS11445 0.62 -1.3
2,409,387 - BWI76_RS11445 0.63 -0.4
2,409,469 + BWI76_RS11445 0.75 +0.9
2,409,606 - +0.4
2,410,009 + BWI76_RS11450 0.28 -2.3
2,410,017 - BWI76_RS11450 0.28 -0.9
2,410,579 + BWI76_RS11450 0.76 -0.9
2,410,592 - BWI76_RS11450 0.77 -0.7
2,410,592 - BWI76_RS11450 0.77 -1.3
2,410,623 + BWI76_RS11450 0.79 -1.0
2,410,726 + BWI76_RS11450 0.88 -1.2
2,410,837 + -1.3
2,411,331 + BWI76_RS11455 0.46 +0.1
2,411,569 - BWI76_RS11455 0.76 +0.7
2,411,656 - BWI76_RS11455 0.87 +0.8
2,411,861 + BWI76_RS11460 0.27 -1.2

Or see this region's nucleotide sequence