Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07290 and BWI76_RS07295 overlap by 4 nucleotides BWI76_RS07295 and BWI76_RS07300 overlap by 4 nucleotides BWI76_RS07300 and BWI76_RS07305 are separated by 146 nucleotides
BWI76_RS07290: BWI76_RS07290 - PTS beta-glucoside transporter subunit EIIBCA, at 1,533,799 to 1,535,679
_RS07290
BWI76_RS07295: BWI76_RS07295 - 6-phospho-beta-glucosidase, at 1,535,676 to 1,537,100
_RS07295
BWI76_RS07300: BWI76_RS07300 - antitermination protein BlgG, at 1,537,097 to 1,537,936
_RS07300
BWI76_RS07305: BWI76_RS07305 - sucrose operon repressor, at 1,538,083 to 1,539,087
_RS07305
Position (kb) 1535
1536
1537
1538 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1534.934 kb on - strand, within BWI76_RS07290 at 1535.111 kb on + strand, within BWI76_RS07290 at 1535.111 kb on + strand, within BWI76_RS07290 at 1535.111 kb on + strand, within BWI76_RS07290 at 1535.119 kb on - strand, within BWI76_RS07290 at 1535.119 kb on - strand, within BWI76_RS07290 at 1535.119 kb on - strand, within BWI76_RS07290 at 1535.343 kb on + strand, within BWI76_RS07290 at 1535.392 kb on - strand, within BWI76_RS07290 at 1535.408 kb on + strand, within BWI76_RS07290 at 1535.416 kb on - strand, within BWI76_RS07290 at 1535.449 kb on - strand, within BWI76_RS07290 at 1535.552 kb on - strand at 1535.590 kb on + strand at 1535.600 kb on + strand at 1535.710 kb on + strand at 1535.738 kb on - strand at 1535.752 kb on - strand at 1535.864 kb on - strand, within BWI76_RS07295 at 1535.888 kb on + strand, within BWI76_RS07295 at 1536.067 kb on - strand, within BWI76_RS07295 at 1536.102 kb on - strand, within BWI76_RS07295 at 1536.109 kb on + strand, within BWI76_RS07295 at 1536.284 kb on + strand, within BWI76_RS07295 at 1536.373 kb on - strand, within BWI76_RS07295 at 1536.423 kb on - strand, within BWI76_RS07295 at 1536.664 kb on - strand, within BWI76_RS07295 at 1536.788 kb on + strand, within BWI76_RS07295 at 1536.811 kb on - strand, within BWI76_RS07295 at 1536.941 kb on + strand, within BWI76_RS07295 at 1536.949 kb on - strand, within BWI76_RS07295 at 1537.184 kb on + strand, within BWI76_RS07300 at 1537.280 kb on - strand, within BWI76_RS07300 at 1537.280 kb on - strand, within BWI76_RS07300 at 1537.377 kb on + strand, within BWI76_RS07300 at 1537.588 kb on + strand, within BWI76_RS07300 at 1537.658 kb on + strand, within BWI76_RS07300 at 1537.665 kb on + strand, within BWI76_RS07300 at 1537.732 kb on + strand, within BWI76_RS07300 at 1537.863 kb on + strand at 1537.899 kb on + strand at 1537.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,534,934 - BWI76_RS07290 0.60 +0.3 1,535,111 + BWI76_RS07290 0.70 +0.7 1,535,111 + BWI76_RS07290 0.70 +1.9 1,535,111 + BWI76_RS07290 0.70 -2.3 1,535,119 - BWI76_RS07290 0.70 -0.1 1,535,119 - BWI76_RS07290 0.70 +2.3 1,535,119 - BWI76_RS07290 0.70 -0.2 1,535,343 + BWI76_RS07290 0.82 -1.2 1,535,392 - BWI76_RS07290 0.85 -0.9 1,535,408 + BWI76_RS07290 0.86 -0.9 1,535,416 - BWI76_RS07290 0.86 +0.3 1,535,449 - BWI76_RS07290 0.88 -0.9 1,535,552 - -0.5 1,535,590 + -0.1 1,535,600 + -0.6 1,535,710 + -0.4 1,535,738 - -0.0 1,535,752 - -0.0 1,535,864 - BWI76_RS07295 0.13 +0.6 1,535,888 + BWI76_RS07295 0.15 -0.7 1,536,067 - BWI76_RS07295 0.27 +0.2 1,536,102 - BWI76_RS07295 0.30 +0.3 1,536,109 + BWI76_RS07295 0.30 +0.4 1,536,284 + BWI76_RS07295 0.43 +3.3 1,536,373 - BWI76_RS07295 0.49 -2.0 1,536,423 - BWI76_RS07295 0.52 -2.2 1,536,664 - BWI76_RS07295 0.69 -2.0 1,536,788 + BWI76_RS07295 0.78 +2.2 1,536,811 - BWI76_RS07295 0.80 -1.1 1,536,941 + BWI76_RS07295 0.89 -1.9 1,536,949 - BWI76_RS07295 0.89 +4.3 1,537,184 + BWI76_RS07300 0.10 -0.7 1,537,280 - BWI76_RS07300 0.22 -0.3 1,537,280 - BWI76_RS07300 0.22 -1.8 1,537,377 + BWI76_RS07300 0.33 -0.8 1,537,588 + BWI76_RS07300 0.58 -0.2 1,537,658 + BWI76_RS07300 0.67 -0.8 1,537,665 + BWI76_RS07300 0.68 -0.3 1,537,732 + BWI76_RS07300 0.76 +0.9 1,537,863 + +0.2 1,537,899 + -1.5 1,537,949 - -1.2
Or see this region's nucleotide sequence