Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06970

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06965 and BWI76_RS06970 are separated by 106 nucleotidesBWI76_RS06970 and BWI76_RS06975 are separated by 87 nucleotides BWI76_RS06965: BWI76_RS06965 - membrane protein, at 1,462,636 to 1,463,781 _RS06965 BWI76_RS06970: BWI76_RS06970 - selenophosphate-dependent tRNA 2-selenouridine synthase, at 1,463,888 to 1,464,973 _RS06970 BWI76_RS06975: BWI76_RS06975 - DNA-binding transcriptional activator AllS, at 1,465,061 to 1,465,984 _RS06975 Position (kb) 1463 1464 1465Strain fitness (log2 ratio) -2 -1 0 1at 1462.891 kb on - strand, within BWI76_RS06965at 1462.938 kb on - strand, within BWI76_RS06965at 1462.991 kb on - strand, within BWI76_RS06965at 1463.012 kb on - strand, within BWI76_RS06965at 1463.012 kb on - strand, within BWI76_RS06965at 1463.061 kb on - strand, within BWI76_RS06965at 1463.422 kb on + strand, within BWI76_RS06965at 1463.685 kb on + strandat 1463.775 kb on + strandat 1463.810 kb on + strandat 1463.873 kb on - strandat 1463.889 kb on - strandat 1464.424 kb on + strand, within BWI76_RS06970at 1464.550 kb on - strand, within BWI76_RS06970at 1464.601 kb on + strand, within BWI76_RS06970at 1464.622 kb on - strand, within BWI76_RS06970at 1464.637 kb on - strand, within BWI76_RS06970at 1464.846 kb on + strand, within BWI76_RS06970at 1464.925 kb on + strandat 1464.982 kb on + strandat 1465.048 kb on - strandat 1465.074 kb on - strandat 1465.141 kb on - strandat 1465.143 kb on + strandat 1465.208 kb on - strand, within BWI76_RS06975at 1465.347 kb on + strand, within BWI76_RS06975at 1465.372 kb on + strand, within BWI76_RS06975at 1465.542 kb on - strand, within BWI76_RS06975at 1465.646 kb on + strand, within BWI76_RS06975at 1465.925 kb on + strandat 1465.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,462,891 - BWI76_RS06965 0.22 -0.0
1,462,938 - BWI76_RS06965 0.26 -0.4
1,462,991 - BWI76_RS06965 0.31 -0.2
1,463,012 - BWI76_RS06965 0.33 -0.0
1,463,012 - BWI76_RS06965 0.33 -0.7
1,463,061 - BWI76_RS06965 0.37 -0.3
1,463,422 + BWI76_RS06965 0.69 -1.2
1,463,685 + -0.9
1,463,775 + +0.6
1,463,810 + +0.1
1,463,873 - +1.1
1,463,889 - +0.5
1,464,424 + BWI76_RS06970 0.49 +0.0
1,464,550 - BWI76_RS06970 0.61 -0.1
1,464,601 + BWI76_RS06970 0.66 +0.1
1,464,622 - BWI76_RS06970 0.68 +0.5
1,464,637 - BWI76_RS06970 0.69 -1.2
1,464,846 + BWI76_RS06970 0.88 +0.4
1,464,925 + +1.6
1,464,982 + -1.5
1,465,048 - -1.9
1,465,074 - +0.0
1,465,141 - +1.0
1,465,143 + +1.2
1,465,208 - BWI76_RS06975 0.16 +0.1
1,465,347 + BWI76_RS06975 0.31 -0.9
1,465,372 + BWI76_RS06975 0.34 +0.5
1,465,542 - BWI76_RS06975 0.52 -0.2
1,465,646 + BWI76_RS06975 0.63 -1.0
1,465,925 + -1.1
1,465,928 - +0.2

Or see this region's nucleotide sequence