Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04955 and BWI76_RS04960 are separated by 50 nucleotides BWI76_RS04960 and BWI76_RS04965 are separated by 107 nucleotides BWI76_RS04965 and BWI76_RS04970 overlap by 4 nucleotides BWI76_RS04970 and BWI76_RS04975 are separated by 121 nucleotides
BWI76_RS04955: BWI76_RS04955 - hypoxanthine phosphoribosyltransferase, at 1,041,584 to 1,042,120
_RS04955
BWI76_RS04960: BWI76_RS04960 - carbonate dehydratase, at 1,042,171 to 1,042,833
_RS04960
BWI76_RS04965: BWI76_RS04965 - ABC transporter ATP-binding protein, at 1,042,941 to 1,043,867
_RS04965
BWI76_RS04970: BWI76_RS04970 - ABC transporter permease, at 1,043,864 to 1,044,634
_RS04970
BWI76_RS04975: BWI76_RS04975 - PTS fructose subfamily transporter subunit IIA, at 1,044,756 to 1,045,196
_RS04975
Position (kb) 1042
1043
1044 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1042.160 kb on - strand at 1042.160 kb on - strand at 1042.279 kb on + strand, within BWI76_RS04960 at 1042.303 kb on - strand at 1042.491 kb on + strand, within BWI76_RS04960 at 1042.585 kb on + strand, within BWI76_RS04960 at 1042.624 kb on - strand, within BWI76_RS04960 at 1042.785 kb on + strand at 1043.048 kb on + strand, within BWI76_RS04965 at 1043.131 kb on - strand, within BWI76_RS04965 at 1043.190 kb on - strand, within BWI76_RS04965 at 1043.524 kb on + strand, within BWI76_RS04965 at 1043.532 kb on - strand, within BWI76_RS04965 at 1043.560 kb on + strand, within BWI76_RS04965 at 1043.784 kb on - strand at 1044.143 kb on - strand, within BWI76_RS04970 at 1044.297 kb on + strand, within BWI76_RS04970 at 1044.305 kb on - strand, within BWI76_RS04970 at 1044.654 kb on + strand at 1044.842 kb on + strand, within BWI76_RS04975
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,042,160 - -1.2 1,042,160 - -2.6 1,042,279 + BWI76_RS04960 0.16 -1.6 1,042,303 - -0.1 1,042,491 + BWI76_RS04960 0.48 +0.1 1,042,585 + BWI76_RS04960 0.62 +0.1 1,042,624 - BWI76_RS04960 0.68 -0.8 1,042,785 + -0.5 1,043,048 + BWI76_RS04965 0.12 +1.3 1,043,131 - BWI76_RS04965 0.20 +0.7 1,043,190 - BWI76_RS04965 0.27 -0.7 1,043,524 + BWI76_RS04965 0.63 +0.1 1,043,532 - BWI76_RS04965 0.64 +0.2 1,043,560 + BWI76_RS04965 0.67 +3.9 1,043,784 - +0.1 1,044,143 - BWI76_RS04970 0.36 -1.0 1,044,297 + BWI76_RS04970 0.56 +0.2 1,044,305 - BWI76_RS04970 0.57 -1.0 1,044,654 + -0.0 1,044,842 + BWI76_RS04975 0.20 +0.0
Or see this region's nucleotide sequence