Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04260

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04255 and BWI76_RS04260 are separated by 51 nucleotidesBWI76_RS04260 and BWI76_RS04265 are separated by 77 nucleotides BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202 _RS04255 BWI76_RS04260: BWI76_RS04260 - peroxide stress protein YaaA, at 877,254 to 878,027 _RS04260 BWI76_RS04265: BWI76_RS04265 - sodium:alanine symporter family protein, at 878,105 to 879,535 _RS04265 Position (kb) 877 878 879Strain fitness (log2 ratio) -2 -1 0 1 2at 876.398 kb on + strand, within BWI76_RS04255at 876.428 kb on + strand, within BWI76_RS04255at 876.620 kb on + strand, within BWI76_RS04255at 876.620 kb on + strand, within BWI76_RS04255at 876.644 kb on + strand, within BWI76_RS04255at 876.644 kb on + strand, within BWI76_RS04255at 876.812 kb on + strand, within BWI76_RS04255at 876.812 kb on + strand, within BWI76_RS04255at 876.820 kb on - strand, within BWI76_RS04255at 876.820 kb on - strand, within BWI76_RS04255at 877.744 kb on + strand, within BWI76_RS04260at 877.854 kb on - strand, within BWI76_RS04260at 877.928 kb on + strand, within BWI76_RS04260at 878.022 kb on + strandat 878.031 kb on - strandat 878.228 kb on + strandat 878.354 kb on - strand, within BWI76_RS04265at 878.354 kb on - strand, within BWI76_RS04265at 878.354 kb on - strand, within BWI76_RS04265at 878.364 kb on - strand, within BWI76_RS04265at 878.559 kb on - strandat 878.587 kb on + strand, within BWI76_RS04265at 878.649 kb on - strand, within BWI76_RS04265at 878.669 kb on - strand, within BWI76_RS04265at 878.876 kb on - strand, within BWI76_RS04265at 878.897 kb on - strand, within BWI76_RS04265at 878.977 kb on - strand, within BWI76_RS04265

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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876,398 + BWI76_RS04255 0.37 -2.6
876,428 + BWI76_RS04255 0.40 -0.1
876,620 + BWI76_RS04255 0.54 +0.0
876,620 + BWI76_RS04255 0.54 +0.3
876,644 + BWI76_RS04255 0.56 +0.9
876,644 + BWI76_RS04255 0.56 -1.1
876,812 + BWI76_RS04255 0.69 -0.3
876,812 + BWI76_RS04255 0.69 -1.3
876,820 - BWI76_RS04255 0.70 -0.5
876,820 - BWI76_RS04255 0.70 -2.0
877,744 + BWI76_RS04260 0.63 +0.5
877,854 - BWI76_RS04260 0.78 +2.1
877,928 + BWI76_RS04260 0.87 +0.1
878,022 + +1.2
878,031 - -0.7
878,228 + -0.0
878,354 - BWI76_RS04265 0.17 -1.4
878,354 - BWI76_RS04265 0.17 -0.4
878,354 - BWI76_RS04265 0.17 +1.5
878,364 - BWI76_RS04265 0.18 +0.4
878,559 - +1.4
878,587 + BWI76_RS04265 0.34 -0.1
878,649 - BWI76_RS04265 0.38 -1.1
878,669 - BWI76_RS04265 0.39 +2.4
878,876 - BWI76_RS04265 0.54 -0.3
878,897 - BWI76_RS04265 0.55 +2.4
878,977 - BWI76_RS04265 0.61 -0.5

Or see this region's nucleotide sequence