Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03970

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS03960 and BWI76_RS03965 are separated by 16 nucleotidesBWI76_RS03965 and BWI76_RS03970 overlap by 23 nucleotidesBWI76_RS03970 and BWI76_RS03975 are separated by 12 nucleotides BWI76_RS03960: BWI76_RS03960 - PTS system sorbose subfamily IIB component, at 820,027 to 820,497 _RS03960 BWI76_RS03965: BWI76_RS03965 - PTS sugar transporter, at 820,514 to 821,293 _RS03965 BWI76_RS03970: BWI76_RS03970 - PTS mannose/fructose/sorbose family transporter subunit IID, at 821,271 to 822,122 _RS03970 BWI76_RS03975: BWI76_RS03975 - glucosamine--fructose-6-phosphate aminotransferase, at 822,135 to 823,196 _RS03975 Position (kb) 821 822 823Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 820.278 kb on + strand, within BWI76_RS03960at 820.286 kb on - strand, within BWI76_RS03960at 820.287 kb on + strand, within BWI76_RS03960at 820.287 kb on + strand, within BWI76_RS03960at 820.300 kb on - strand, within BWI76_RS03960at 820.302 kb on - strand, within BWI76_RS03960at 820.325 kb on + strand, within BWI76_RS03960at 820.325 kb on + strand, within BWI76_RS03960at 820.333 kb on - strand, within BWI76_RS03960at 820.333 kb on - strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.341 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.346 kb on + strand, within BWI76_RS03960at 820.347 kb on + strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.349 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.354 kb on - strand, within BWI76_RS03960at 820.356 kb on - strand, within BWI76_RS03960at 820.408 kb on - strand, within BWI76_RS03960at 820.411 kb on + strandat 820.418 kb on - strand, within BWI76_RS03960at 820.422 kb on + strand, within BWI76_RS03960at 820.430 kb on - strand, within BWI76_RS03960at 820.432 kb on + strand, within BWI76_RS03960at 820.433 kb on + strand, within BWI76_RS03960at 820.439 kb on + strand, within BWI76_RS03960at 820.440 kb on - strand, within BWI76_RS03960at 820.441 kb on + strand, within BWI76_RS03960at 820.441 kb on + strand, within BWI76_RS03960at 820.441 kb on + strand, within BWI76_RS03960at 820.441 kb on - strand, within BWI76_RS03960at 820.447 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.449 kb on - strand, within BWI76_RS03960at 820.456 kb on + strandat 820.463 kb on - strandat 820.476 kb on + strandat 820.510 kb on + strandat 820.510 kb on + strandat 820.510 kb on + strandat 820.510 kb on + strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.518 kb on - strandat 820.526 kb on + strandat 820.534 kb on - strandat 820.544 kb on - strandat 820.544 kb on - strandat 820.620 kb on + strand, within BWI76_RS03965at 820.625 kb on + strand, within BWI76_RS03965at 820.628 kb on - strand, within BWI76_RS03965at 820.721 kb on - strand, within BWI76_RS03965at 820.809 kb on - strand, within BWI76_RS03965at 820.843 kb on + strand, within BWI76_RS03965at 820.882 kb on - strand, within BWI76_RS03965at 820.892 kb on - strand, within BWI76_RS03965at 820.965 kb on - strand, within BWI76_RS03965at 821.214 kb on + strand, within BWI76_RS03965at 821.327 kb on - strandat 821.357 kb on + strand, within BWI76_RS03970at 821.450 kb on + strand, within BWI76_RS03970at 821.703 kb on - strand, within BWI76_RS03970at 821.723 kb on + strand, within BWI76_RS03970at 821.802 kb on + strand, within BWI76_RS03970at 821.817 kb on - strand, within BWI76_RS03970at 821.866 kb on - strand, within BWI76_RS03970at 821.881 kb on + strand, within BWI76_RS03970at 822.038 kb on + strandat 822.161 kb on - strandat 822.379 kb on + strand, within BWI76_RS03975at 822.440 kb on + strand, within BWI76_RS03975at 822.501 kb on - strand, within BWI76_RS03975at 822.644 kb on - strand, within BWI76_RS03975at 822.727 kb on + strand, within BWI76_RS03975at 822.964 kb on - strand, within BWI76_RS03975at 822.966 kb on - strand, within BWI76_RS03975at 823.008 kb on - strand, within BWI76_RS03975at 823.008 kb on - strand, within BWI76_RS03975at 823.014 kb on - strand, within BWI76_RS03975at 823.043 kb on + strand, within BWI76_RS03975at 823.044 kb on + strand, within BWI76_RS03975at 823.044 kb on + strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strandat 823.052 kb on - strand, within BWI76_RS03975at 823.052 kb on - strand, within BWI76_RS03975at 823.062 kb on - strand, within BWI76_RS03975at 823.062 kb on - strand, within BWI76_RS03975at 823.063 kb on + strand, within BWI76_RS03975at 823.069 kb on + strand, within BWI76_RS03975at 823.071 kb on - strand, within BWI76_RS03975at 823.085 kb on - strand, within BWI76_RS03975at 823.088 kb on + strand, within BWI76_RS03975at 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.098 kb on + strandat 823.101 kb on - strandat 823.106 kb on - strandat 823.106 kb on - strandat 823.106 kb on - strandat 823.106 kb on - strandat 823.106 kb on - strandat 823.106 kb on - strandat 823.109 kb on + strandat 823.118 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
820,278 + BWI76_RS03960 0.53 +0.4
820,286 - BWI76_RS03960 0.55 -0.2
820,287 + BWI76_RS03960 0.55 -1.0
820,287 + BWI76_RS03960 0.55 +1.0
820,300 - BWI76_RS03960 0.58 -1.3
820,302 - BWI76_RS03960 0.58 -1.3
820,325 + BWI76_RS03960 0.63 +0.1
820,325 + BWI76_RS03960 0.63 -0.1
820,333 - BWI76_RS03960 0.65 +0.1
820,333 - BWI76_RS03960 0.65 +2.1
820,341 + BWI76_RS03960 0.67 -0.2
820,341 + BWI76_RS03960 0.67 +0.2
820,341 + BWI76_RS03960 0.67 -0.2
820,341 + BWI76_RS03960 0.67 +0.4
820,341 + BWI76_RS03960 0.67 -0.6
820,341 + BWI76_RS03960 0.67 -1.3
820,346 + BWI76_RS03960 0.68 +0.2
820,346 + BWI76_RS03960 0.68 -1.0
820,346 + BWI76_RS03960 0.68 +0.3
820,346 + BWI76_RS03960 0.68 +3.7
820,346 + BWI76_RS03960 0.68 -1.4
820,346 + BWI76_RS03960 0.68 -0.2
820,346 + BWI76_RS03960 0.68 -0.5
820,346 + BWI76_RS03960 0.68 -0.6
820,346 + BWI76_RS03960 0.68 -1.6
820,346 + BWI76_RS03960 0.68 -0.3
820,346 + BWI76_RS03960 0.68 +0.5
820,347 + BWI76_RS03960 0.68 -1.0
820,349 - BWI76_RS03960 0.68 +1.6
820,349 - BWI76_RS03960 0.68 +0.8
820,349 - BWI76_RS03960 0.68 +0.5
820,349 - BWI76_RS03960 0.68 +0.9
820,349 - BWI76_RS03960 0.68 -0.4
820,349 - BWI76_RS03960 0.68 -2.3
820,354 - BWI76_RS03960 0.69 +2.5
820,354 - BWI76_RS03960 0.69 +0.1
820,354 - BWI76_RS03960 0.69 -1.7
820,354 - BWI76_RS03960 0.69 -0.5
820,354 - BWI76_RS03960 0.69 +2.2
820,354 - BWI76_RS03960 0.69 +0.0
820,356 - BWI76_RS03960 0.70 -0.1
820,408 - BWI76_RS03960 0.81 +0.1
820,411 + +0.6
820,418 - BWI76_RS03960 0.83 -0.0
820,422 + BWI76_RS03960 0.84 -0.4
820,430 - BWI76_RS03960 0.86 -0.7
820,432 + BWI76_RS03960 0.86 -1.0
820,433 + BWI76_RS03960 0.86 +0.4
820,439 + BWI76_RS03960 0.87 -1.7
820,440 - BWI76_RS03960 0.88 -2.7
820,441 + BWI76_RS03960 0.88 -0.2
820,441 + BWI76_RS03960 0.88 +0.3
820,441 + BWI76_RS03960 0.88 -0.4
820,441 - BWI76_RS03960 0.88 +0.5
820,447 - BWI76_RS03960 0.89 -1.0
820,449 - BWI76_RS03960 0.90 -0.6
820,449 - BWI76_RS03960 0.90 +0.3
820,449 - BWI76_RS03960 0.90 -1.4
820,449 - BWI76_RS03960 0.90 +0.5
820,449 - BWI76_RS03960 0.90 -1.0
820,449 - BWI76_RS03960 0.90 -1.3
820,456 + -1.2
820,463 - +1.0
820,476 + -1.0
820,510 + -1.8
820,510 + +0.8
820,510 + -2.0
820,510 + +0.7
820,518 - +0.5
820,518 - -0.4
820,518 - -0.3
820,518 - +0.1
820,518 - -0.4
820,518 - -0.5
820,518 - -2.0
820,518 - +0.7
820,518 - +0.6
820,526 + +0.5
820,534 - +0.3
820,544 - +0.8
820,544 - +0.2
820,620 + BWI76_RS03965 0.14 -0.6
820,625 + BWI76_RS03965 0.14 -0.2
820,628 - BWI76_RS03965 0.15 +1.2
820,721 - BWI76_RS03965 0.27 -0.1
820,809 - BWI76_RS03965 0.38 +0.5
820,843 + BWI76_RS03965 0.42 -0.7
820,882 - BWI76_RS03965 0.47 -0.6
820,892 - BWI76_RS03965 0.48 +0.6
820,965 - BWI76_RS03965 0.58 -0.7
821,214 + BWI76_RS03965 0.90 -0.8
821,327 - -0.9
821,357 + BWI76_RS03970 0.10 +0.1
821,450 + BWI76_RS03970 0.21 +0.8
821,703 - BWI76_RS03970 0.51 +1.4
821,723 + BWI76_RS03970 0.53 -3.5
821,802 + BWI76_RS03970 0.62 +4.5
821,817 - BWI76_RS03970 0.64 +1.8
821,866 - BWI76_RS03970 0.70 -2.2
821,881 + BWI76_RS03970 0.72 -0.9
822,038 + -0.5
822,161 - -0.4
822,379 + BWI76_RS03975 0.23 +0.9
822,440 + BWI76_RS03975 0.29 -0.7
822,501 - BWI76_RS03975 0.34 -0.6
822,644 - BWI76_RS03975 0.48 +0.3
822,727 + BWI76_RS03975 0.56 +1.6
822,964 - BWI76_RS03975 0.78 +0.3
822,966 - BWI76_RS03975 0.78 +0.5
823,008 - BWI76_RS03975 0.82 -1.6
823,008 - BWI76_RS03975 0.82 +4.7
823,014 - BWI76_RS03975 0.83 -0.6
823,043 + BWI76_RS03975 0.85 +0.4
823,044 + BWI76_RS03975 0.86 +2.3
823,044 + BWI76_RS03975 0.86 -3.6
823,052 - BWI76_RS03975 0.86 -1.3
823,052 - BWI76_RS03975 0.86 +0.4
823,052 - BWI76_RS03975 0.86 -0.4
823,052 - BWI76_RS03975 0.86 -0.7
823,052 - BWI76_RS03975 0.86 -1.1
823,052 - -1.5
823,052 - BWI76_RS03975 0.86 -1.2
823,052 - BWI76_RS03975 0.86 -0.6
823,062 - BWI76_RS03975 0.87 -0.2
823,062 - BWI76_RS03975 0.87 -0.1
823,063 + BWI76_RS03975 0.87 +1.2
823,069 + BWI76_RS03975 0.88 -1.4
823,071 - BWI76_RS03975 0.88 -0.2
823,085 - BWI76_RS03975 0.89 -0.0
823,088 + BWI76_RS03975 0.90 +4.0
823,098 + +0.1
823,098 + -2.3
823,098 + -0.1
823,098 + +0.1
823,098 + -0.5
823,098 + -0.3
823,098 + +1.3
823,098 + -0.4
823,098 + +0.2
823,098 + +0.2
823,098 + +0.5
823,101 - -0.2
823,106 - +0.4
823,106 - +1.7
823,106 - +0.3
823,106 - +0.8
823,106 - +0.6
823,106 - +0.7
823,109 + -0.5
823,118 - -0.0

Or see this region's nucleotide sequence