Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03625 and BWI76_RS03630 are separated by 87 nucleotides BWI76_RS03630 and BWI76_RS03635 overlap by 7 nucleotides BWI76_RS03635 and BWI76_RS03640 are separated by 158 nucleotides
BWI76_RS03625: BWI76_RS03625 - NAD(P)H quinone oxidoreductase, at 749,309 to 750,091
_RS03625
BWI76_RS03630: BWI76_RS03630 - LysR family transcriptional regulator, at 750,179 to 751,087
_RS03630
BWI76_RS03635: BWI76_RS03635 - FosA family fosfomycin resistance glutathione transferase, at 751,081 to 751,524
_RS03635
BWI76_RS03640: BWI76_RS03640 - amino acid permease-associated protein, at 751,683 to 753,026
_RS03640
Position (kb) 750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 749.219 kb on - strand at 749.320 kb on - strand at 749.376 kb on - strand at 749.381 kb on + strand at 749.483 kb on - strand, within BWI76_RS03625 at 749.530 kb on + strand, within BWI76_RS03625 at 749.538 kb on - strand, within BWI76_RS03625 at 749.568 kb on + strand, within BWI76_RS03625 at 749.610 kb on + strand at 749.739 kb on + strand, within BWI76_RS03625 at 749.739 kb on + strand, within BWI76_RS03625 at 749.754 kb on + strand, within BWI76_RS03625 at 749.757 kb on - strand, within BWI76_RS03625 at 749.970 kb on + strand, within BWI76_RS03625 at 749.978 kb on - strand, within BWI76_RS03625 at 749.984 kb on + strand, within BWI76_RS03625 at 750.123 kb on + strand at 750.263 kb on - strand at 750.294 kb on + strand, within BWI76_RS03630 at 750.475 kb on - strand, within BWI76_RS03630 at 750.534 kb on - strand, within BWI76_RS03630 at 750.548 kb on + strand, within BWI76_RS03630 at 750.734 kb on + strand, within BWI76_RS03630 at 750.734 kb on + strand, within BWI76_RS03630 at 750.751 kb on + strand, within BWI76_RS03630 at 750.880 kb on + strand, within BWI76_RS03630 at 750.948 kb on + strand, within BWI76_RS03630 at 751.005 kb on + strand at 751.646 kb on - strand at 751.769 kb on + strand at 751.861 kb on - strand, within BWI76_RS03640 at 751.946 kb on - strand, within BWI76_RS03640 at 751.990 kb on - strand, within BWI76_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 749,219 - -1.6 749,320 - -0.0 749,376 - -0.5 749,381 + +0.1 749,483 - BWI76_RS03625 0.22 +0.3 749,530 + BWI76_RS03625 0.28 -0.2 749,538 - BWI76_RS03625 0.29 -0.4 749,568 + BWI76_RS03625 0.33 -0.3 749,610 + +1.7 749,739 + BWI76_RS03625 0.55 -0.5 749,739 + BWI76_RS03625 0.55 +0.4 749,754 + BWI76_RS03625 0.57 -0.5 749,757 - BWI76_RS03625 0.57 +1.3 749,970 + BWI76_RS03625 0.84 -2.4 749,978 - BWI76_RS03625 0.85 +0.6 749,984 + BWI76_RS03625 0.86 -1.2 750,123 + -0.2 750,263 - +0.1 750,294 + BWI76_RS03630 0.13 -0.6 750,475 - BWI76_RS03630 0.33 -1.2 750,534 - BWI76_RS03630 0.39 +10.1 750,548 + BWI76_RS03630 0.41 +0.1 750,734 + BWI76_RS03630 0.61 -0.1 750,734 + BWI76_RS03630 0.61 +0.6 750,751 + BWI76_RS03630 0.63 -2.8 750,880 + BWI76_RS03630 0.77 -1.1 750,948 + BWI76_RS03630 0.85 -0.9 751,005 + -0.0 751,646 - +1.0 751,769 + +0.2 751,861 - BWI76_RS03640 0.13 +3.7 751,946 - BWI76_RS03640 0.20 +0.4 751,990 - BWI76_RS03640 0.23 -1.6
Or see this region's nucleotide sequence