Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02265 and BWI76_RS02270 are separated by 224 nucleotides BWI76_RS02270 and BWI76_RS02275 are separated by 36 nucleotides BWI76_RS02275 and BWI76_RS02280 are separated by 115 nucleotides
BWI76_RS02265: BWI76_RS02265 - putative transmembrane protein, at 465,855 to 466,535
_RS02265
BWI76_RS02270: BWI76_RS02270 - DSBA oxidoreductase, at 466,760 to 467,542
_RS02270
BWI76_RS02275: BWI76_RS02275 - TetR family transcriptional regulator, at 467,579 to 468,175
_RS02275
BWI76_RS02280: BWI76_RS02280 - NAD(P)H dehydrogenase (quinone), at 468,291 to 468,878
_RS02280
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 465.801 kb on - strand at 465.853 kb on + strand at 465.907 kb on - strand at 465.907 kb on - strand at 465.925 kb on - strand, within BWI76_RS02265 at 466.201 kb on - strand, within BWI76_RS02265 at 466.315 kb on - strand, within BWI76_RS02265 at 466.421 kb on + strand, within BWI76_RS02265 at 466.429 kb on - strand, within BWI76_RS02265 at 466.434 kb on - strand, within BWI76_RS02265 at 466.589 kb on + strand at 466.589 kb on + strand at 466.589 kb on + strand at 466.591 kb on - strand at 466.597 kb on - strand at 466.606 kb on - strand at 466.614 kb on + strand at 466.695 kb on + strand at 466.740 kb on - strand at 466.859 kb on + strand, within BWI76_RS02270 at 466.926 kb on - strand, within BWI76_RS02270 at 466.958 kb on + strand, within BWI76_RS02270 at 466.971 kb on - strand, within BWI76_RS02270 at 466.993 kb on - strand, within BWI76_RS02270 at 467.193 kb on - strand, within BWI76_RS02270 at 467.256 kb on - strand, within BWI76_RS02270 at 467.605 kb on - strand at 467.639 kb on - strand, within BWI76_RS02275 at 467.668 kb on - strand, within BWI76_RS02275 at 467.693 kb on + strand, within BWI76_RS02275 at 467.725 kb on + strand at 467.938 kb on - strand, within BWI76_RS02275 at 467.963 kb on - strand, within BWI76_RS02275 at 468.144 kb on - strand at 468.151 kb on - strand at 468.320 kb on + strand at 468.351 kb on - strand, within BWI76_RS02280 at 468.483 kb on - strand, within BWI76_RS02280 at 468.504 kb on - strand, within BWI76_RS02280
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 465,801 - +0.9 465,853 + +0.1 465,907 - +0.8 465,907 - -0.5 465,925 - BWI76_RS02265 0.10 +1.0 466,201 - BWI76_RS02265 0.51 -0.1 466,315 - BWI76_RS02265 0.68 +0.8 466,421 + BWI76_RS02265 0.83 -0.5 466,429 - BWI76_RS02265 0.84 -0.4 466,434 - BWI76_RS02265 0.85 -1.1 466,589 + -0.5 466,589 + +1.5 466,589 + +1.2 466,591 - -1.5 466,597 - +1.8 466,606 - +0.5 466,614 + +0.5 466,695 + -0.8 466,740 - -0.7 466,859 + BWI76_RS02270 0.13 +0.3 466,926 - BWI76_RS02270 0.21 +0.1 466,958 + BWI76_RS02270 0.25 +0.5 466,971 - BWI76_RS02270 0.27 -0.1 466,993 - BWI76_RS02270 0.30 +1.1 467,193 - BWI76_RS02270 0.55 +4.6 467,256 - BWI76_RS02270 0.63 -0.8 467,605 - -0.1 467,639 - BWI76_RS02275 0.10 -0.3 467,668 - BWI76_RS02275 0.15 -0.6 467,693 + BWI76_RS02275 0.19 -1.8 467,725 + +0.1 467,938 - BWI76_RS02275 0.60 -1.2 467,963 - BWI76_RS02275 0.64 -0.4 468,144 - +1.5 468,151 - +1.5 468,320 + -0.8 468,351 - BWI76_RS02280 0.10 +0.3 468,483 - BWI76_RS02280 0.33 -0.3 468,504 - BWI76_RS02280 0.36 -0.5
Or see this region's nucleotide sequence