Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27445 and BWI76_RS27450 are separated by 95 nucleotides BWI76_RS27450 and BWI76_RS27455 are separated by 0 nucleotides BWI76_RS27455 and BWI76_RS27460 are separated by 112 nucleotides
BWI76_RS27445: BWI76_RS27445 - fructose-bisphosphatase class II, at 5,694,899 to 5,695,909
_RS27445
BWI76_RS27450: BWI76_RS27450 - ferredoxin--NADP(+) reductase, at 5,696,005 to 5,696,751
_RS27450
BWI76_RS27455: BWI76_RS27455 - DUF805 domain-containing protein, at 5,696,752 to 5,697,180
_RS27455
BWI76_RS27460: BWI76_RS27460 - hypothetical protein, at 5,697,293 to 5,697,892
_RS27460
Position (kb) 5696
5697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5695.104 kb on - strand, within BWI76_RS27445 at 5695.475 kb on + strand, within BWI76_RS27445 at 5695.553 kb on + strand, within BWI76_RS27445 at 5695.771 kb on + strand, within BWI76_RS27445 at 5695.880 kb on + strand at 5696.061 kb on + strand at 5696.392 kb on + strand, within BWI76_RS27450 at 5696.400 kb on - strand, within BWI76_RS27450 at 5696.429 kb on - strand, within BWI76_RS27450 at 5696.497 kb on - strand, within BWI76_RS27450 at 5696.627 kb on + strand, within BWI76_RS27450 at 5696.637 kb on - strand, within BWI76_RS27450 at 5696.864 kb on + strand, within BWI76_RS27455 at 5696.942 kb on + strand, within BWI76_RS27455 at 5697.030 kb on + strand, within BWI76_RS27455 at 5697.168 kb on + strand at 5697.168 kb on + strand at 5697.176 kb on - strand at 5697.176 kb on - strand at 5697.181 kb on + strand at 5697.360 kb on - strand, within BWI76_RS27460 at 5697.457 kb on + strand, within BWI76_RS27460 at 5697.518 kb on + strand, within BWI76_RS27460 at 5697.518 kb on + strand, within BWI76_RS27460 at 5697.659 kb on + strand, within BWI76_RS27460 at 5697.673 kb on - strand, within BWI76_RS27460
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,695,104 - BWI76_RS27445 0.20 +0.2 5,695,475 + BWI76_RS27445 0.57 -0.2 5,695,553 + BWI76_RS27445 0.65 -0.6 5,695,771 + BWI76_RS27445 0.86 +1.8 5,695,880 + +1.3 5,696,061 + -2.0 5,696,392 + BWI76_RS27450 0.52 -0.1 5,696,400 - BWI76_RS27450 0.53 -0.4 5,696,429 - BWI76_RS27450 0.57 +0.3 5,696,497 - BWI76_RS27450 0.66 +0.4 5,696,627 + BWI76_RS27450 0.83 +1.6 5,696,637 - BWI76_RS27450 0.85 +2.2 5,696,864 + BWI76_RS27455 0.26 -1.5 5,696,942 + BWI76_RS27455 0.44 -0.5 5,697,030 + BWI76_RS27455 0.65 +0.3 5,697,168 + -1.8 5,697,168 + -2.2 5,697,176 - -1.2 5,697,176 - -0.3 5,697,181 + +0.6 5,697,360 - BWI76_RS27460 0.11 -1.0 5,697,457 + BWI76_RS27460 0.27 +0.1 5,697,518 + BWI76_RS27460 0.38 +0.8 5,697,518 + BWI76_RS27460 0.38 -0.2 5,697,659 + BWI76_RS27460 0.61 -1.0 5,697,673 - BWI76_RS27460 0.63 -1.9
Or see this region's nucleotide sequence