Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26585 and BWI76_RS26590 are separated by 87 nucleotides BWI76_RS26590 and BWI76_RS26595 are separated by 231 nucleotides BWI76_RS26595 and BWI76_RS26600 are separated by 35 nucleotides BWI76_RS26600 and BWI76_RS26605 are separated by 101 nucleotides
BWI76_RS26585: BWI76_RS26585 - MFS transporter, at 5,503,083 to 5,504,555
_RS26585
BWI76_RS26590: BWI76_RS26590 - transcriptional regulator, at 5,504,643 to 5,505,146
_RS26590
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
BWI76_RS26600: BWI76_RS26600 - hypothetical protein, at 5,506,613 to 5,506,912
_RS26600
BWI76_RS26605: BWI76_RS26605 - 16S rRNA (guanine(1516)-N(2))-methyltransferase, at 5,507,014 to 5,507,793
_RS26605
Position (kb) 5505
5506
5507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5504.583 kb on - strand at 5504.670 kb on - strand at 5504.741 kb on + strand, within BWI76_RS26590 at 5504.915 kb on + strand, within BWI76_RS26590 at 5504.930 kb on - strand, within BWI76_RS26590 at 5505.143 kb on - strand at 5505.380 kb on - strand at 5505.429 kb on + strand at 5505.437 kb on - strand at 5505.483 kb on - strand at 5505.499 kb on - strand, within BWI76_RS26595 at 5505.504 kb on - strand, within BWI76_RS26595 at 5505.628 kb on + strand, within BWI76_RS26595 at 5505.628 kb on + strand, within BWI76_RS26595 at 5505.984 kb on + strand, within BWI76_RS26595 at 5506.066 kb on + strand, within BWI76_RS26595 at 5506.074 kb on - strand, within BWI76_RS26595 at 5506.167 kb on - strand, within BWI76_RS26595 at 5506.184 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.652 kb on - strand, within BWI76_RS26600 at 5506.659 kb on + strand, within BWI76_RS26600 at 5506.700 kb on + strand, within BWI76_RS26600 at 5506.708 kb on - strand, within BWI76_RS26600 at 5506.723 kb on - strand, within BWI76_RS26600 at 5506.754 kb on - strand, within BWI76_RS26600 at 5506.820 kb on - strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.885 kb on - strand at 5506.919 kb on - strand at 5507.148 kb on - strand, within BWI76_RS26605 at 5507.185 kb on - strand, within BWI76_RS26605 at 5507.285 kb on + strand, within BWI76_RS26605 at 5507.290 kb on + strand, within BWI76_RS26605 at 5507.307 kb on + strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.339 kb on - strand, within BWI76_RS26605 at 5507.390 kb on + strand, within BWI76_RS26605 at 5507.406 kb on + strand, within BWI76_RS26605 at 5507.464 kb on + strand, within BWI76_RS26605
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,504,583 - +0.1 5,504,670 - +0.4 5,504,741 + BWI76_RS26590 0.19 +0.8 5,504,915 + BWI76_RS26590 0.54 -0.4 5,504,930 - BWI76_RS26590 0.57 -1.3 5,505,143 - +0.6 5,505,380 - -1.2 5,505,429 + +0.6 5,505,437 - +0.1 5,505,483 - -0.5 5,505,499 - BWI76_RS26595 0.10 +0.3 5,505,504 - BWI76_RS26595 0.10 -1.2 5,505,628 + BWI76_RS26595 0.21 +0.0 5,505,628 + BWI76_RS26595 0.21 -2.3 5,505,984 + BWI76_RS26595 0.51 +0.4 5,506,066 + BWI76_RS26595 0.57 +2.0 5,506,074 - BWI76_RS26595 0.58 -1.6 5,506,167 - BWI76_RS26595 0.66 -3.3 5,506,184 - BWI76_RS26595 0.67 +0.4 5,506,407 - BWI76_RS26595 0.86 -0.2 5,506,407 - BWI76_RS26595 0.86 -0.1 5,506,644 + BWI76_RS26600 0.10 -1.9 5,506,644 + BWI76_RS26600 0.10 -1.2 5,506,652 - BWI76_RS26600 0.13 -0.8 5,506,659 + BWI76_RS26600 0.15 -2.9 5,506,700 + BWI76_RS26600 0.29 -0.2 5,506,708 - BWI76_RS26600 0.32 +0.2 5,506,723 - BWI76_RS26600 0.37 +0.7 5,506,754 - BWI76_RS26600 0.47 +0.2 5,506,820 - BWI76_RS26600 0.69 -2.1 5,506,877 + BWI76_RS26600 0.88 +0.3 5,506,877 + BWI76_RS26600 0.88 -0.3 5,506,885 - +0.2 5,506,919 - -1.3 5,507,148 - BWI76_RS26605 0.17 -0.4 5,507,185 - BWI76_RS26605 0.22 +4.8 5,507,285 + BWI76_RS26605 0.35 +1.4 5,507,290 + BWI76_RS26605 0.35 -1.6 5,507,307 + BWI76_RS26605 0.38 +1.2 5,507,315 - BWI76_RS26605 0.39 -3.2 5,507,315 - BWI76_RS26605 0.39 +0.4 5,507,315 - BWI76_RS26605 0.39 +0.2 5,507,339 - BWI76_RS26605 0.42 -0.3 5,507,390 + BWI76_RS26605 0.48 -2.2 5,507,406 + BWI76_RS26605 0.50 -2.3 5,507,464 + BWI76_RS26605 0.58 +2.1
Or see this region's nucleotide sequence