Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24935 and BWI76_RS24940 are separated by 72 nucleotides BWI76_RS24940 and BWI76_RS24945 are separated by 128 nucleotides BWI76_RS24945 and BWI76_RS24950 overlap by 21 nucleotides
BWI76_RS24935: BWI76_RS24935 - hypothetical protein, at 5,195,269 to 5,196,309
_RS24935
BWI76_RS24940: BWI76_RS24940 - hypothetical protein, at 5,196,382 to 5,197,029
_RS24940
BWI76_RS24945: BWI76_RS24945 - glutamine amidotransferase, at 5,197,158 to 5,197,676
_RS24945
BWI76_RS24950: BWI76_RS24950 - hypothetical protein, at 5,197,656 to 5,198,099
_RS24950
Position (kb) 5196
5197
5198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 5195.393 kb on - strand, within BWI76_RS24935 at 5195.516 kb on + strand, within BWI76_RS24935 at 5195.516 kb on + strand, within BWI76_RS24935 at 5195.528 kb on + strand, within BWI76_RS24935 at 5195.803 kb on + strand, within BWI76_RS24935 at 5195.811 kb on - strand, within BWI76_RS24935 at 5195.857 kb on - strand, within BWI76_RS24935 at 5195.971 kb on - strand, within BWI76_RS24935 at 5195.994 kb on + strand, within BWI76_RS24935 at 5196.154 kb on - strand, within BWI76_RS24935 at 5196.290 kb on + strand at 5196.343 kb on + strand at 5196.503 kb on + strand, within BWI76_RS24940 at 5196.869 kb on + strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5197.147 kb on - strand at 5197.174 kb on - strand at 5197.206 kb on + strand at 5197.251 kb on - strand, within BWI76_RS24945 at 5197.795 kb on + strand, within BWI76_RS24950 at 5197.854 kb on + strand, within BWI76_RS24950 at 5197.901 kb on - strand, within BWI76_RS24950
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 5,195,393 - BWI76_RS24935 0.12 +0.8 5,195,516 + BWI76_RS24935 0.24 +1.1 5,195,516 + BWI76_RS24935 0.24 -0.4 5,195,528 + BWI76_RS24935 0.25 -2.3 5,195,803 + BWI76_RS24935 0.51 -1.4 5,195,811 - BWI76_RS24935 0.52 -1.1 5,195,857 - BWI76_RS24935 0.56 +0.0 5,195,971 - BWI76_RS24935 0.67 -1.1 5,195,994 + BWI76_RS24935 0.70 -0.3 5,196,154 - BWI76_RS24935 0.85 -0.0 5,196,290 + +0.4 5,196,343 + +0.6 5,196,503 + BWI76_RS24940 0.19 -1.4 5,196,869 + BWI76_RS24940 0.75 +0.1 5,196,877 - BWI76_RS24940 0.76 +7.0 5,196,877 - BWI76_RS24940 0.76 +1.7 5,197,147 - +0.3 5,197,174 - -0.3 5,197,206 + +1.6 5,197,251 - BWI76_RS24945 0.18 -3.2 5,197,795 + BWI76_RS24950 0.31 -0.4 5,197,854 + BWI76_RS24950 0.45 -1.2 5,197,901 - BWI76_RS24950 0.55 +0.5
Or see this region's nucleotide sequence