Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20155 and BWI76_RS20160 are separated by 14 nucleotides BWI76_RS20160 and BWI76_RS20165 overlap by 4 nucleotides BWI76_RS20165 and BWI76_RS20170 are separated by 32 nucleotides
BWI76_RS20155: BWI76_RS20155 - NADH-quinone oxidoreductase subunit I, at 4,222,840 to 4,223,382
_RS20155
BWI76_RS20160: BWI76_RS20160 - NADH-quinone oxidoreductase subunit H, at 4,223,397 to 4,224,374
_RS20160
BWI76_RS20165: BWI76_RS20165 - NADH-quinone oxidoreductase subunit G, at 4,224,371 to 4,227,097
_RS20165
BWI76_RS20170: BWI76_RS20170 - NADH-quinone oxidoreductase subunit F, at 4,227,130 to 4,228,467
_RS20170
Position (kb) 4224
4225
4226
4227
4228 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4223.388 kb on + strand at 4223.447 kb on + strand at 4223.659 kb on + strand, within BWI76_RS20160 at 4223.804 kb on - strand, within BWI76_RS20160 at 4224.021 kb on + strand, within BWI76_RS20160 at 4224.218 kb on - strand, within BWI76_RS20160 at 4224.587 kb on - strand at 4225.133 kb on - strand, within BWI76_RS20165 at 4225.631 kb on + strand, within BWI76_RS20165 at 4226.002 kb on + strand, within BWI76_RS20165 at 4226.002 kb on + strand, within BWI76_RS20165 at 4226.418 kb on - strand, within BWI76_RS20165 at 4226.753 kb on - strand, within BWI76_RS20165 at 4226.753 kb on - strand, within BWI76_RS20165 at 4226.908 kb on - strand at 4227.802 kb on - strand, within BWI76_RS20170 at 4227.826 kb on + strand, within BWI76_RS20170 at 4227.944 kb on + strand, within BWI76_RS20170 at 4228.008 kb on - strand, within BWI76_RS20170
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 4,223,388 + -1.9 4,223,447 + -1.9 4,223,659 + BWI76_RS20160 0.27 -2.7 4,223,804 - BWI76_RS20160 0.42 -2.1 4,224,021 + BWI76_RS20160 0.64 -1.6 4,224,218 - BWI76_RS20160 0.84 -3.2 4,224,587 - -2.1 4,225,133 - BWI76_RS20165 0.28 +0.0 4,225,631 + BWI76_RS20165 0.46 -0.7 4,226,002 + BWI76_RS20165 0.60 -0.7 4,226,002 + BWI76_RS20165 0.60 -2.3 4,226,418 - BWI76_RS20165 0.75 -1.1 4,226,753 - BWI76_RS20165 0.87 -0.1 4,226,753 - BWI76_RS20165 0.87 -3.4 4,226,908 - -2.8 4,227,802 - BWI76_RS20170 0.50 +0.4 4,227,826 + BWI76_RS20170 0.52 -1.8 4,227,944 + BWI76_RS20170 0.61 -1.5 4,228,008 - BWI76_RS20170 0.66 -1.4
Or see this region's nucleotide sequence