Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19760

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19755 and BWI76_RS19760 are separated by 119 nucleotidesBWI76_RS19760 and BWI76_RS19765 are separated by 41 nucleotides BWI76_RS19755: BWI76_RS19755 - fructuronate reductase, at 4,129,556 to 4,131,022 _RS19755 BWI76_RS19760: BWI76_RS19760 - GTP-binding protein, at 4,131,142 to 4,132,119 _RS19760 BWI76_RS19765: BWI76_RS19765 - membrane protein, at 4,132,161 to 4,132,868 _RS19765 Position (kb) 4131 4132 4133Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4130.183 kb on - strand, within BWI76_RS19755at 4130.610 kb on + strand, within BWI76_RS19755at 4130.622 kb on - strand, within BWI76_RS19755at 4130.773 kb on - strand, within BWI76_RS19755at 4130.923 kb on + strandat 4131.102 kb on + strandat 4131.499 kb on - strand, within BWI76_RS19760at 4131.616 kb on + strand, within BWI76_RS19760at 4131.690 kb on + strand, within BWI76_RS19760at 4131.852 kb on - strand, within BWI76_RS19760at 4132.158 kb on - strandat 4132.295 kb on + strand, within BWI76_RS19765at 4132.314 kb on + strand, within BWI76_RS19765at 4132.374 kb on + strand, within BWI76_RS19765at 4132.382 kb on - strand, within BWI76_RS19765at 4132.446 kb on + strand, within BWI76_RS19765at 4132.537 kb on - strand, within BWI76_RS19765at 4132.585 kb on + strand, within BWI76_RS19765at 4132.729 kb on - strand, within BWI76_RS19765at 4132.775 kb on - strand, within BWI76_RS19765at 4132.792 kb on - strand, within BWI76_RS19765at 4132.810 kb on + strandat 4132.900 kb on + strandat 4133.020 kb on - strandat 4133.023 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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4,130,183 - BWI76_RS19755 0.43 +0.5
4,130,610 + BWI76_RS19755 0.72 -0.1
4,130,622 - BWI76_RS19755 0.73 -1.7
4,130,773 - BWI76_RS19755 0.83 -0.2
4,130,923 + -2.2
4,131,102 + +0.3
4,131,499 - BWI76_RS19760 0.37 +6.8
4,131,616 + BWI76_RS19760 0.48 +0.1
4,131,690 + BWI76_RS19760 0.56 +0.3
4,131,852 - BWI76_RS19760 0.73 +0.7
4,132,158 - -0.8
4,132,295 + BWI76_RS19765 0.19 -1.8
4,132,314 + BWI76_RS19765 0.22 -0.2
4,132,374 + BWI76_RS19765 0.30 -0.1
4,132,382 - BWI76_RS19765 0.31 +0.1
4,132,446 + BWI76_RS19765 0.40 -0.9
4,132,537 - BWI76_RS19765 0.53 +0.2
4,132,585 + BWI76_RS19765 0.60 -0.1
4,132,729 - BWI76_RS19765 0.80 -1.4
4,132,775 - BWI76_RS19765 0.87 -0.2
4,132,792 - BWI76_RS19765 0.89 -0.8
4,132,810 + -0.3
4,132,900 + -1.0
4,133,020 - +0.2
4,133,023 + -2.3

Or see this region's nucleotide sequence