Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17650

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17645 and BWI76_RS17650 overlap by 8 nucleotidesBWI76_RS17650 and BWI76_RS17655 are separated by 103 nucleotides BWI76_RS17645: BWI76_RS17645 - hypothetical protein, at 3,665,623 to 3,666,423 _RS17645 BWI76_RS17650: BWI76_RS17650 - putative fatty acid desaturase, at 3,666,416 to 3,667,399 _RS17650 BWI76_RS17655: BWI76_RS17655 - MFS transporter, at 3,667,503 to 3,668,642 _RS17655 Position (kb) 3666 3667 3668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3665.852 kb on - strand, within BWI76_RS17645at 3666.217 kb on - strand, within BWI76_RS17645at 3666.433 kb on - strandat 3666.443 kb on - strandat 3666.654 kb on - strand, within BWI76_RS17650at 3666.656 kb on + strand, within BWI76_RS17650at 3666.659 kb on - strand, within BWI76_RS17650at 3666.686 kb on + strand, within BWI76_RS17650at 3667.080 kb on + strand, within BWI76_RS17650at 3667.188 kb on + strand, within BWI76_RS17650at 3667.189 kb on + strand, within BWI76_RS17650at 3667.508 kb on - strandat 3668.127 kb on - strand, within BWI76_RS17655at 3668.136 kb on + strand, within BWI76_RS17655at 3668.221 kb on + strand, within BWI76_RS17655at 3668.281 kb on - strand, within BWI76_RS17655

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,665,852 - BWI76_RS17645 0.29 +0.6
3,666,217 - BWI76_RS17645 0.74 -0.5
3,666,433 - -0.3
3,666,443 - +0.0
3,666,654 - BWI76_RS17650 0.24 +5.7
3,666,656 + BWI76_RS17650 0.24 +4.1
3,666,659 - BWI76_RS17650 0.25 -0.7
3,666,686 + BWI76_RS17650 0.27 -0.1
3,667,080 + BWI76_RS17650 0.67 -0.9
3,667,188 + BWI76_RS17650 0.78 -0.2
3,667,189 + BWI76_RS17650 0.79 +0.7
3,667,508 - +0.5
3,668,127 - BWI76_RS17655 0.55 -2.0
3,668,136 + BWI76_RS17655 0.56 +0.0
3,668,221 + BWI76_RS17655 0.63 -0.2
3,668,281 - BWI76_RS17655 0.68 +0.7

Or see this region's nucleotide sequence