Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14485

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14480 and BWI76_RS14485 overlap by 11 nucleotidesBWI76_RS14485 and BWI76_RS14490 overlap by 4 nucleotides BWI76_RS14480: BWI76_RS14480 - hypothetical protein, at 3,022,174 to 3,023,424 _RS14480 BWI76_RS14485: BWI76_RS14485 - two-component sensor histidine kinase, at 3,023,414 to 3,025,423 _RS14485 BWI76_RS14490: BWI76_RS14490 - ABC transporter substrate-binding protein, at 3,025,420 to 3,026,691 _RS14490 Position (kb) 3023 3024 3025 3026Strain fitness (log2 ratio) -3 -2 -1 0 1at 3022.421 kb on - strand, within BWI76_RS14480at 3022.484 kb on + strand, within BWI76_RS14480at 3022.592 kb on + strand, within BWI76_RS14480at 3022.698 kb on + strand, within BWI76_RS14480at 3022.838 kb on - strand, within BWI76_RS14480at 3023.077 kb on - strand, within BWI76_RS14480at 3023.265 kb on + strand, within BWI76_RS14480at 3023.273 kb on - strand, within BWI76_RS14480at 3023.366 kb on - strandat 3023.536 kb on + strandat 3023.841 kb on - strand, within BWI76_RS14485at 3023.853 kb on - strand, within BWI76_RS14485at 3023.881 kb on - strand, within BWI76_RS14485at 3024.096 kb on + strand, within BWI76_RS14485at 3024.161 kb on - strand, within BWI76_RS14485at 3024.162 kb on + strand, within BWI76_RS14485at 3024.188 kb on + strand, within BWI76_RS14485at 3024.302 kb on - strand, within BWI76_RS14485at 3024.910 kb on + strandat 3025.108 kb on - strand, within BWI76_RS14485at 3025.153 kb on + strand, within BWI76_RS14485at 3025.161 kb on - strand, within BWI76_RS14485at 3025.502 kb on + strandat 3025.573 kb on + strandat 3025.842 kb on + strand, within BWI76_RS14490at 3026.051 kb on - strand, within BWI76_RS14490at 3026.114 kb on - strand, within BWI76_RS14490at 3026.237 kb on + strand, within BWI76_RS14490

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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3,022,421 - BWI76_RS14480 0.20 -1.9
3,022,484 + BWI76_RS14480 0.25 +0.9
3,022,592 + BWI76_RS14480 0.33 -0.6
3,022,698 + BWI76_RS14480 0.42 +0.9
3,022,838 - BWI76_RS14480 0.53 -1.2
3,023,077 - BWI76_RS14480 0.72 +1.0
3,023,265 + BWI76_RS14480 0.87 -0.4
3,023,273 - BWI76_RS14480 0.88 -3.5
3,023,366 - +0.1
3,023,536 + +0.7
3,023,841 - BWI76_RS14485 0.21 -1.0
3,023,853 - BWI76_RS14485 0.22 -0.0
3,023,881 - BWI76_RS14485 0.23 +0.9
3,024,096 + BWI76_RS14485 0.34 -1.5
3,024,161 - BWI76_RS14485 0.37 +0.2
3,024,162 + BWI76_RS14485 0.37 +0.5
3,024,188 + BWI76_RS14485 0.39 -0.7
3,024,302 - BWI76_RS14485 0.44 -0.6
3,024,910 + -1.0
3,025,108 - BWI76_RS14485 0.84 -0.4
3,025,153 + BWI76_RS14485 0.87 -0.8
3,025,161 - BWI76_RS14485 0.87 +0.2
3,025,502 + +0.8
3,025,573 + +0.7
3,025,842 + BWI76_RS14490 0.33 -0.3
3,026,051 - BWI76_RS14490 0.50 +0.3
3,026,114 - BWI76_RS14490 0.55 -0.5
3,026,237 + BWI76_RS14490 0.64 -1.1

Or see this region's nucleotide sequence