Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06640 and BWI76_RS06650 are separated by 661 nucleotides BWI76_RS06650 and BWI76_RS06655 overlap by 4 nucleotides BWI76_RS06655 and BWI76_RS06660 are separated by 133 nucleotides
BWI76_RS06640: BWI76_RS06640 - hypothetical protein, at 1,394,956 to 1,395,363
_RS06640
BWI76_RS06650: BWI76_RS06650 - hypothetical protein, at 1,396,025 to 1,396,282
_RS06650
BWI76_RS06655: BWI76_RS06655 - hypothetical protein, at 1,396,279 to 1,396,494
_RS06655
BWI76_RS06660: BWI76_RS06660 - GntR family transcriptional regulator with, at 1,396,628 to 1,398,055
_RS06660
Position (kb) 1396
1397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1395.328 kb on + strand at 1395.336 kb on - strand at 1395.718 kb on + strand at 1395.732 kb on + strand at 1395.758 kb on + strand at 1395.766 kb on - strand at 1395.766 kb on - strand at 1395.904 kb on - strand at 1395.938 kb on + strand at 1396.022 kb on + strand at 1396.022 kb on + strand at 1396.022 kb on + strand at 1396.022 kb on + strand at 1396.022 kb on + strand at 1396.023 kb on + strand at 1396.027 kb on + strand at 1396.030 kb on - strand at 1396.030 kb on - strand at 1396.030 kb on - strand at 1396.032 kb on + strand at 1396.032 kb on + strand at 1396.035 kb on - strand at 1396.037 kb on + strand at 1396.037 kb on + strand at 1396.040 kb on - strand at 1396.124 kb on + strand, within BWI76_RS06650 at 1396.124 kb on - strand, within BWI76_RS06650 at 1396.130 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.135 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.136 kb on + strand, within BWI76_RS06650 at 1396.144 kb on - strand, within BWI76_RS06650 at 1396.144 kb on - strand, within BWI76_RS06650 at 1396.144 kb on - strand, within BWI76_RS06650 at 1396.170 kb on + strand, within BWI76_RS06650 at 1396.170 kb on + strand, within BWI76_RS06650 at 1396.178 kb on - strand, within BWI76_RS06650 at 1396.178 kb on - strand, within BWI76_RS06650 at 1396.179 kb on - strand, within BWI76_RS06650 at 1396.194 kb on + strand, within BWI76_RS06650 at 1396.204 kb on + strand, within BWI76_RS06650 at 1396.204 kb on + strand, within BWI76_RS06650 at 1396.293 kb on + strand at 1396.293 kb on + strand at 1396.301 kb on - strand, within BWI76_RS06655 at 1396.301 kb on - strand, within BWI76_RS06655 at 1396.301 kb on - strand, within BWI76_RS06655 at 1396.308 kb on + strand, within BWI76_RS06655 at 1396.316 kb on - strand, within BWI76_RS06655 at 1396.316 kb on - strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.318 kb on + strand, within BWI76_RS06655 at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.326 kb on - strand at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.326 kb on - strand at 1396.326 kb on - strand at 1396.326 kb on - strand, within BWI76_RS06655 at 1396.327 kb on + strand, within BWI76_RS06655 at 1396.329 kb on + strand, within BWI76_RS06655 at 1396.329 kb on + strand, within BWI76_RS06655 at 1396.332 kb on + strand, within BWI76_RS06655 at 1396.335 kb on - strand, within BWI76_RS06655 at 1396.337 kb on - strand, within BWI76_RS06655 at 1396.337 kb on - strand at 1396.350 kb on + strand, within BWI76_RS06655 at 1396.352 kb on + strand, within BWI76_RS06655 at 1396.352 kb on - strand, within BWI76_RS06655 at 1396.353 kb on + strand, within BWI76_RS06655 at 1396.357 kb on + strand, within BWI76_RS06655 at 1396.360 kb on - strand, within BWI76_RS06655 at 1396.365 kb on - strand, within BWI76_RS06655 at 1396.365 kb on - strand, within BWI76_RS06655 at 1396.399 kb on + strand, within BWI76_RS06655 at 1396.399 kb on + strand, within BWI76_RS06655 at 1396.407 kb on - strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.410 kb on + strand, within BWI76_RS06655 at 1396.417 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.418 kb on - strand, within BWI76_RS06655 at 1396.476 kb on - strand at 1396.496 kb on - strand at 1396.566 kb on + strand at 1396.568 kb on + strand at 1396.601 kb on + strand at 1396.602 kb on + strand at 1396.605 kb on + strand at 1396.605 kb on + strand at 1396.606 kb on + strand at 1396.606 kb on + strand at 1396.606 kb on + strand at 1396.613 kb on - strand at 1396.614 kb on - strand at 1396.614 kb on - strand at 1396.614 kb on - strand at 1396.631 kb on + strand at 1396.653 kb on + strand at 1396.653 kb on + strand at 1396.653 kb on + strand at 1396.658 kb on + strand at 1396.661 kb on - strand at 1396.661 kb on - strand at 1396.661 kb on - strand at 1396.661 kb on - strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on + strand at 1396.666 kb on - strand at 1396.671 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.672 kb on + strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.674 kb on - strand at 1396.679 kb on - strand at 1396.679 kb on - strand at 1396.685 kb on + strand at 1396.690 kb on + strand at 1396.709 kb on + strand at 1396.717 kb on - strand at 1396.717 kb on - strand at 1396.717 kb on - strand at 1396.717 kb on - strand at 1396.717 kb on - strand at 1396.720 kb on + strand at 1396.728 kb on - strand at 1396.730 kb on + strand at 1396.737 kb on - strand at 1396.738 kb on - strand at 1396.766 kb on + strand at 1396.771 kb on + strand, within BWI76_RS06660 at 1396.778 kb on + strand, within BWI76_RS06660 at 1396.778 kb on + strand, within BWI76_RS06660 at 1396.779 kb on - strand, within BWI76_RS06660 at 1396.779 kb on - strand, within BWI76_RS06660 at 1396.875 kb on + strand, within BWI76_RS06660 at 1396.964 kb on - strand, within BWI76_RS06660 at 1397.031 kb on - strand, within BWI76_RS06660 at 1397.098 kb on - strand, within BWI76_RS06660 at 1397.110 kb on - strand, within BWI76_RS06660 at 1397.398 kb on + strand, within BWI76_RS06660 at 1397.434 kb on - strand, within BWI76_RS06660
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 1,395,328 + +0.1 1,395,336 - -0.2 1,395,718 + -0.4 1,395,732 + -2.4 1,395,758 + -2.8 1,395,766 - +0.7 1,395,766 - -0.4 1,395,904 - +0.7 1,395,938 + +0.5 1,396,022 + +0.7 1,396,022 + -0.8 1,396,022 + -0.9 1,396,022 + +0.2 1,396,022 + +0.4 1,396,023 + -3.2 1,396,027 + +2.1 1,396,030 - -0.3 1,396,030 - -2.2 1,396,030 - +1.2 1,396,032 + -0.9 1,396,032 + -0.3 1,396,035 - +2.8 1,396,037 + -1.2 1,396,037 + +0.7 1,396,040 - -1.4 1,396,124 + BWI76_RS06650 0.38 -1.7 1,396,124 - BWI76_RS06650 0.38 +0.0 1,396,130 + BWI76_RS06650 0.41 -0.2 1,396,135 + BWI76_RS06650 0.43 -1.5 1,396,135 + BWI76_RS06650 0.43 -0.8 1,396,135 + BWI76_RS06650 0.43 +0.2 1,396,135 + BWI76_RS06650 0.43 +0.2 1,396,135 + BWI76_RS06650 0.43 +1.1 1,396,135 + BWI76_RS06650 0.43 +0.1 1,396,135 + BWI76_RS06650 0.43 -1.7 1,396,136 + BWI76_RS06650 0.43 +2.7 1,396,136 + BWI76_RS06650 0.43 +1.6 1,396,136 + BWI76_RS06650 0.43 +0.1 1,396,136 + BWI76_RS06650 0.43 +0.0 1,396,136 + BWI76_RS06650 0.43 +0.6 1,396,136 + BWI76_RS06650 0.43 -0.4 1,396,136 + BWI76_RS06650 0.43 +0.5 1,396,136 + BWI76_RS06650 0.43 -1.2 1,396,136 + +0.7 1,396,136 + BWI76_RS06650 0.43 +1.3 1,396,136 + BWI76_RS06650 0.43 +0.6 1,396,136 + BWI76_RS06650 0.43 +0.9 1,396,136 + BWI76_RS06650 0.43 -0.3 1,396,136 + +1.5 1,396,136 + BWI76_RS06650 0.43 -0.8 1,396,136 + BWI76_RS06650 0.43 +1.1 1,396,136 + BWI76_RS06650 0.43 -1.3 1,396,136 + BWI76_RS06650 0.43 -0.6 1,396,136 + BWI76_RS06650 0.43 -0.2 1,396,144 - BWI76_RS06650 0.46 +1.9 1,396,144 - BWI76_RS06650 0.46 +0.7 1,396,144 - BWI76_RS06650 0.46 -2.2 1,396,170 + BWI76_RS06650 0.56 +1.1 1,396,170 + BWI76_RS06650 0.56 +1.1 1,396,178 - BWI76_RS06650 0.59 -2.5 1,396,178 - BWI76_RS06650 0.59 -1.1 1,396,179 - BWI76_RS06650 0.60 -0.1 1,396,194 + BWI76_RS06650 0.66 +0.4 1,396,204 + BWI76_RS06650 0.69 -3.4 1,396,204 + BWI76_RS06650 0.69 +0.3 1,396,293 + -0.7 1,396,293 + +0.1 1,396,301 - BWI76_RS06655 0.10 +1.5 1,396,301 - BWI76_RS06655 0.10 +0.3 1,396,301 - BWI76_RS06655 0.10 +0.9 1,396,308 + BWI76_RS06655 0.13 -3.6 1,396,316 - BWI76_RS06655 0.17 -0.8 1,396,316 - BWI76_RS06655 0.17 +2.0 1,396,318 + BWI76_RS06655 0.18 -1.7 1,396,318 + BWI76_RS06655 0.18 +0.9 1,396,318 + BWI76_RS06655 0.18 -1.0 1,396,318 + BWI76_RS06655 0.18 +0.6 1,396,318 + BWI76_RS06655 0.18 +0.5 1,396,318 + BWI76_RS06655 0.18 +0.0 1,396,318 + BWI76_RS06655 0.18 +0.9 1,396,318 + BWI76_RS06655 0.18 -1.2 1,396,318 + BWI76_RS06655 0.18 +3.3 1,396,318 + BWI76_RS06655 0.18 +2.6 1,396,318 + BWI76_RS06655 0.18 -1.4 1,396,326 - BWI76_RS06655 0.22 -0.3 1,396,326 - +0.1 1,396,326 - BWI76_RS06655 0.22 +0.3 1,396,326 - BWI76_RS06655 0.22 +1.4 1,396,326 - BWI76_RS06655 0.22 +0.0 1,396,326 - BWI76_RS06655 0.22 +0.6 1,396,326 - -0.3 1,396,326 - +0.4 1,396,326 - BWI76_RS06655 0.22 -0.1 1,396,327 + BWI76_RS06655 0.22 +0.6 1,396,329 + BWI76_RS06655 0.23 -1.1 1,396,329 + BWI76_RS06655 0.23 -0.3 1,396,332 + BWI76_RS06655 0.25 +0.0 1,396,335 - BWI76_RS06655 0.26 +0.0 1,396,337 - BWI76_RS06655 0.27 +1.8 1,396,337 - +1.4 1,396,350 + BWI76_RS06655 0.33 -0.9 1,396,352 + BWI76_RS06655 0.34 -1.1 1,396,352 - BWI76_RS06655 0.34 -2.2 1,396,353 + BWI76_RS06655 0.34 +0.9 1,396,357 + BWI76_RS06655 0.36 -0.3 1,396,360 - BWI76_RS06655 0.38 +0.3 1,396,365 - BWI76_RS06655 0.40 -1.7 1,396,365 - BWI76_RS06655 0.40 +0.7 1,396,399 + BWI76_RS06655 0.56 +0.0 1,396,399 + BWI76_RS06655 0.56 +0.4 1,396,407 - BWI76_RS06655 0.59 -1.6 1,396,410 + BWI76_RS06655 0.61 +0.2 1,396,410 + BWI76_RS06655 0.61 -1.7 1,396,410 + BWI76_RS06655 0.61 +0.3 1,396,410 + BWI76_RS06655 0.61 -0.3 1,396,410 + BWI76_RS06655 0.61 -0.6 1,396,410 + BWI76_RS06655 0.61 -2.8 1,396,410 + BWI76_RS06655 0.61 +1.8 1,396,410 + BWI76_RS06655 0.61 +0.1 1,396,410 + BWI76_RS06655 0.61 +1.6 1,396,410 + BWI76_RS06655 0.61 -0.2 1,396,410 + BWI76_RS06655 0.61 -0.3 1,396,417 - BWI76_RS06655 0.64 -1.9 1,396,418 - BWI76_RS06655 0.64 -2.6 1,396,418 - BWI76_RS06655 0.64 +2.4 1,396,418 - BWI76_RS06655 0.64 -1.6 1,396,418 - BWI76_RS06655 0.64 -2.4 1,396,418 - BWI76_RS06655 0.64 -1.3 1,396,418 - BWI76_RS06655 0.64 +3.2 1,396,418 - BWI76_RS06655 0.64 +0.5 1,396,418 - BWI76_RS06655 0.64 +1.8 1,396,418 - BWI76_RS06655 0.64 -0.3 1,396,418 - BWI76_RS06655 0.64 +1.6 1,396,476 - -0.9 1,396,496 - -0.0 1,396,566 + +0.9 1,396,568 + +0.6 1,396,601 + -2.7 1,396,602 + +0.1 1,396,605 + -0.7 1,396,605 + +6.6 1,396,606 + +1.1 1,396,606 + +0.4 1,396,606 + -1.1 1,396,613 - -2.6 1,396,614 - -0.6 1,396,614 - -0.6 1,396,614 - -1.1 1,396,631 + +1.5 1,396,653 + -0.6 1,396,653 + +2.8 1,396,653 + -0.0 1,396,658 + -0.2 1,396,661 - -0.8 1,396,661 - +0.2 1,396,661 - +1.0 1,396,661 - +0.3 1,396,666 + -1.3 1,396,666 + -3.0 1,396,666 + +4.2 1,396,666 + -0.4 1,396,666 + -0.3 1,396,666 + +0.0 1,396,666 + -2.7 1,396,666 + -0.4 1,396,666 + -0.0 1,396,666 + +0.0 1,396,666 + +0.1 1,396,666 + +0.2 1,396,666 - -2.0 1,396,671 + +2.3 1,396,672 + -1.3 1,396,672 + +1.0 1,396,672 + -0.5 1,396,672 + -1.2 1,396,672 + -1.0 1,396,672 + -0.4 1,396,672 + -1.4 1,396,674 - -0.5 1,396,674 - -0.8 1,396,674 - -0.0 1,396,674 - -0.7 1,396,674 - +0.1 1,396,674 - -0.9 1,396,674 - -2.9 1,396,674 - -0.1 1,396,674 - +0.3 1,396,674 - +0.3 1,396,674 - +1.3 1,396,674 - +0.3 1,396,674 - -1.0 1,396,674 - -0.5 1,396,674 - +0.2 1,396,674 - +0.9 1,396,674 - -1.1 1,396,679 - -0.0 1,396,679 - -2.4 1,396,685 + +0.2 1,396,690 + -0.8 1,396,709 + +1.0 1,396,717 - -2.0 1,396,717 - -0.3 1,396,717 - +0.6 1,396,717 - -0.2 1,396,717 - -2.0 1,396,720 + -2.2 1,396,728 - -3.6 1,396,730 + -0.9 1,396,737 - +0.6 1,396,738 - -0.1 1,396,766 + +0.1 1,396,771 + BWI76_RS06660 0.10 -2.4 1,396,778 + BWI76_RS06660 0.11 +0.4 1,396,778 + BWI76_RS06660 0.11 -0.8 1,396,779 - BWI76_RS06660 0.11 -2.4 1,396,779 - BWI76_RS06660 0.11 +1.0 1,396,875 + BWI76_RS06660 0.17 +0.0 1,396,964 - BWI76_RS06660 0.24 -0.6 1,397,031 - BWI76_RS06660 0.28 +0.6 1,397,098 - BWI76_RS06660 0.33 -1.1 1,397,110 - BWI76_RS06660 0.34 +0.4 1,397,398 + BWI76_RS06660 0.54 -0.4 1,397,434 - BWI76_RS06660 0.56 +0.1
Or see this region's nucleotide sequence