Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26155 and BWI76_RS26160 are separated by 58 nucleotides BWI76_RS26160 and BWI76_RS26165 are separated by 10 nucleotides
BWI76_RS26155: BWI76_RS26155 - phosphoenolpyruvate carboxykinase (ATP), at 5,403,552 to 5,405,174
_RS26155
BWI76_RS26160: BWI76_RS26160 - 4-alpha-glucanotransferase (EC 2.4.1.25) <small>(from data)</small>, at 5,405,233 to 5,407,326
_RS26160
BWI76_RS26165: BWI76_RS26165 - Glycogen phosphorylase (EC 2.4.1.1) <small>(from data)</small>, at 5,407,337 to 5,409,727
_RS26165
Position (kb) 5405
5406
5407
5408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5404.239 kb on + strand, within BWI76_RS26155 at 5404.247 kb on - strand, within BWI76_RS26155 at 5404.312 kb on + strand, within BWI76_RS26155 at 5404.689 kb on + strand, within BWI76_RS26155 at 5404.947 kb on + strand, within BWI76_RS26155 at 5404.981 kb on + strand, within BWI76_RS26155 at 5405.039 kb on + strand at 5405.145 kb on + strand at 5405.266 kb on - strand at 5405.319 kb on + strand at 5405.338 kb on - strand at 5405.593 kb on + strand, within BWI76_RS26160 at 5405.621 kb on - strand, within BWI76_RS26160 at 5405.840 kb on - strand, within BWI76_RS26160 at 5405.847 kb on + strand, within BWI76_RS26160 at 5405.916 kb on - strand, within BWI76_RS26160 at 5406.167 kb on + strand, within BWI76_RS26160 at 5406.222 kb on + strand, within BWI76_RS26160 at 5406.362 kb on + strand, within BWI76_RS26160 at 5406.370 kb on - strand, within BWI76_RS26160 at 5406.370 kb on - strand, within BWI76_RS26160 at 5406.377 kb on + strand, within BWI76_RS26160 at 5406.546 kb on + strand, within BWI76_RS26160 at 5406.561 kb on + strand, within BWI76_RS26160 at 5406.644 kb on + strand, within BWI76_RS26160 at 5406.719 kb on - strand, within BWI76_RS26160 at 5406.858 kb on - strand, within BWI76_RS26160 at 5406.869 kb on + strand, within BWI76_RS26160 at 5406.877 kb on - strand, within BWI76_RS26160 at 5407.250 kb on + strand at 5407.323 kb on + strand at 5407.329 kb on - strand at 5407.389 kb on + strand at 5407.433 kb on + strand at 5407.619 kb on - strand, within BWI76_RS26165 at 5407.657 kb on - strand, within BWI76_RS26165 at 5407.835 kb on - strand, within BWI76_RS26165 at 5407.854 kb on + strand at 5408.072 kb on - strand, within BWI76_RS26165 at 5408.092 kb on - strand, within BWI76_RS26165 at 5408.093 kb on + strand, within BWI76_RS26165 at 5408.223 kb on - strand, within BWI76_RS26165 at 5408.223 kb on - strand, within BWI76_RS26165
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,404,239 + BWI76_RS26155 0.42 +0.3 5,404,247 - BWI76_RS26155 0.43 +0.2 5,404,312 + BWI76_RS26155 0.47 -0.2 5,404,689 + BWI76_RS26155 0.70 +0.2 5,404,947 + BWI76_RS26155 0.86 -0.6 5,404,981 + BWI76_RS26155 0.88 -1.4 5,405,039 + -0.2 5,405,145 + +0.3 5,405,266 - -0.9 5,405,319 + -1.1 5,405,338 - -0.0 5,405,593 + BWI76_RS26160 0.17 +0.1 5,405,621 - BWI76_RS26160 0.19 -0.5 5,405,840 - BWI76_RS26160 0.29 +0.9 5,405,847 + BWI76_RS26160 0.29 -0.0 5,405,916 - BWI76_RS26160 0.33 +0.4 5,406,167 + BWI76_RS26160 0.45 -0.2 5,406,222 + BWI76_RS26160 0.47 -0.1 5,406,362 + BWI76_RS26160 0.54 +1.9 5,406,370 - BWI76_RS26160 0.54 +2.7 5,406,370 - BWI76_RS26160 0.54 -0.0 5,406,377 + BWI76_RS26160 0.55 -0.3 5,406,546 + BWI76_RS26160 0.63 -1.6 5,406,561 + BWI76_RS26160 0.63 -0.8 5,406,644 + BWI76_RS26160 0.67 -0.3 5,406,719 - BWI76_RS26160 0.71 -0.6 5,406,858 - BWI76_RS26160 0.78 +0.2 5,406,869 + BWI76_RS26160 0.78 -0.6 5,406,877 - BWI76_RS26160 0.79 -0.3 5,407,250 + -1.4 5,407,323 + +1.0 5,407,329 - -0.5 5,407,389 + -0.0 5,407,433 + -0.1 5,407,619 - BWI76_RS26165 0.12 +0.2 5,407,657 - BWI76_RS26165 0.13 -0.9 5,407,835 - BWI76_RS26165 0.21 +0.5 5,407,854 + +0.7 5,408,072 - BWI76_RS26165 0.31 +0.8 5,408,092 - BWI76_RS26165 0.32 -2.0 5,408,093 + BWI76_RS26165 0.32 -0.8 5,408,223 - BWI76_RS26165 0.37 -0.3 5,408,223 - BWI76_RS26165 0.37 -0.7
Or see this region's nucleotide sequence