Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23865

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23855 and BWI76_RS23860 are separated by 190 nucleotidesBWI76_RS23860 and BWI76_RS23865 are separated by 186 nucleotidesBWI76_RS23865 and BWI76_RS23870 are separated by 60 nucleotides BWI76_RS23855: BWI76_RS23855 - 6-phospho-beta-glucosidase, at 4,977,365 to 4,978,798 _RS23855 BWI76_RS23860: BWI76_RS23860 - protein disulfide oxidoreductase, at 4,978,989 to 4,979,480 _RS23860 BWI76_RS23865: BWI76_RS23865 - NAD(P)-dependent oxidoreductase, at 4,979,667 to 4,980,410 _RS23865 BWI76_RS23870: BWI76_RS23870 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data), at 4,980,471 to 4,983,344 _RS23870 Position (kb) 4979 4980 4981Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4978.672 kb on - strandat 4978.686 kb on + strandat 4978.834 kb on - strandat 4979.169 kb on + strand, within BWI76_RS23860at 4979.524 kb on + strandat 4979.556 kb on - strandat 4979.580 kb on + strandat 4979.590 kb on + strandat 4979.598 kb on - strandat 4979.606 kb on - strandat 4979.844 kb on + strand, within BWI76_RS23865at 4980.004 kb on + strand, within BWI76_RS23865at 4980.012 kb on - strand, within BWI76_RS23865at 4980.038 kb on + strand, within BWI76_RS23865at 4980.154 kb on + strand, within BWI76_RS23865at 4980.162 kb on - strand, within BWI76_RS23865at 4980.213 kb on + strand, within BWI76_RS23865at 4980.309 kb on - strand, within BWI76_RS23865at 4980.309 kb on - strand, within BWI76_RS23865at 4980.339 kb on - strandat 4980.564 kb on + strandat 4980.778 kb on - strand, within BWI76_RS23870at 4981.058 kb on + strand, within BWI76_RS23870at 4981.219 kb on + strand, within BWI76_RS23870at 4981.236 kb on - strand, within BWI76_RS23870at 4981.273 kb on + strand, within BWI76_RS23870

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,978,672 - -0.4
4,978,686 + -0.1
4,978,834 - -0.3
4,979,169 + BWI76_RS23860 0.37 -0.4
4,979,524 + +0.2
4,979,556 - +0.4
4,979,580 + -1.4
4,979,590 + +0.2
4,979,598 - +1.1
4,979,606 - -0.4
4,979,844 + BWI76_RS23865 0.24 -0.5
4,980,004 + BWI76_RS23865 0.45 -0.3
4,980,012 - BWI76_RS23865 0.46 -0.2
4,980,038 + BWI76_RS23865 0.50 -0.8
4,980,154 + BWI76_RS23865 0.65 +6.0
4,980,162 - BWI76_RS23865 0.67 +1.5
4,980,213 + BWI76_RS23865 0.73 +0.1
4,980,309 - BWI76_RS23865 0.86 -0.6
4,980,309 - BWI76_RS23865 0.86 -0.4
4,980,339 - -1.3
4,980,564 + -1.8
4,980,778 - BWI76_RS23870 0.11 -0.5
4,981,058 + BWI76_RS23870 0.20 -0.5
4,981,219 + BWI76_RS23870 0.26 -1.7
4,981,236 - BWI76_RS23870 0.27 -2.0
4,981,273 + BWI76_RS23870 0.28 -1.3

Or see this region's nucleotide sequence