Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20830 and BWI76_RS20835 are separated by 289 nucleotides BWI76_RS20835 and BWI76_RS20840 overlap by 32 nucleotides
BWI76_RS20830: BWI76_RS20830 - bifunctional malic enzyme oxidoreductase/phosphotransacetylase, at 4,351,514 to 4,353,793
_RS20830
BWI76_RS20835: BWI76_RS20835 - transketolase, at 4,354,083 to 4,356,077
_RS20835
BWI76_RS20840: BWI76_RS20840 - hypothetical protein, at 4,356,046 to 4,357,113
_RS20840
Position (kb)
4354
4355
4356
4357 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4353.310 kb on - strand, within BWI76_RS20830 at 4353.401 kb on + strand, within BWI76_RS20830 at 4353.638 kb on - strand at 4353.847 kb on - strand at 4353.856 kb on + strand at 4353.865 kb on - strand at 4353.905 kb on - strand at 4354.263 kb on - strand at 4354.287 kb on - strand, within BWI76_RS20835 at 4354.289 kb on + strand, within BWI76_RS20835 at 4354.289 kb on + strand, within BWI76_RS20835 at 4354.465 kb on - strand, within BWI76_RS20835 at 4354.532 kb on - strand, within BWI76_RS20835 at 4354.602 kb on - strand, within BWI76_RS20835 at 4354.602 kb on - strand, within BWI76_RS20835 at 4354.656 kb on + strand, within BWI76_RS20835 at 4354.793 kb on - strand, within BWI76_RS20835 at 4355.025 kb on - strand, within BWI76_RS20835 at 4355.134 kb on - strand, within BWI76_RS20835 at 4355.239 kb on - strand, within BWI76_RS20835 at 4355.378 kb on - strand, within BWI76_RS20835 at 4355.450 kb on + strand, within BWI76_RS20835 at 4355.603 kb on + strand, within BWI76_RS20835 at 4355.803 kb on - strand, within BWI76_RS20835 at 4355.803 kb on - strand, within BWI76_RS20835 at 4355.858 kb on - strand, within BWI76_RS20835 at 4356.071 kb on - strand at 4356.080 kb on - strand at 4356.279 kb on + strand, within BWI76_RS20840 at 4356.306 kb on + strand, within BWI76_RS20840 at 4356.337 kb on - strand, within BWI76_RS20840 at 4356.674 kb on + strand, within BWI76_RS20840 at 4356.719 kb on + strand, within BWI76_RS20840 at 4356.742 kb on - strand, within BWI76_RS20840 at 4356.930 kb on + strand, within BWI76_RS20840
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,353,310 - BWI76_RS20830 0.79 -0.0 4,353,401 + BWI76_RS20830 0.83 -1.1 4,353,638 - -0.7 4,353,847 - +0.0 4,353,856 + +1.2 4,353,865 - +0.2 4,353,905 - -1.5 4,354,263 - +0.0 4,354,287 - BWI76_RS20835 0.10 +0.4 4,354,289 + BWI76_RS20835 0.10 -0.0 4,354,289 + BWI76_RS20835 0.10 -0.1 4,354,465 - BWI76_RS20835 0.19 -0.4 4,354,532 - BWI76_RS20835 0.23 -1.1 4,354,602 - BWI76_RS20835 0.26 -0.6 4,354,602 - BWI76_RS20835 0.26 +0.9 4,354,656 + BWI76_RS20835 0.29 -0.5 4,354,793 - BWI76_RS20835 0.36 -1.2 4,355,025 - BWI76_RS20835 0.47 +0.4 4,355,134 - BWI76_RS20835 0.53 +2.7 4,355,239 - BWI76_RS20835 0.58 +0.2 4,355,378 - BWI76_RS20835 0.65 -1.1 4,355,450 + BWI76_RS20835 0.69 -0.4 4,355,603 + BWI76_RS20835 0.76 +0.8 4,355,803 - BWI76_RS20835 0.86 -0.4 4,355,803 - BWI76_RS20835 0.86 +0.3 4,355,858 - BWI76_RS20835 0.89 -0.5 4,356,071 - -0.3 4,356,080 - +0.6 4,356,279 + BWI76_RS20840 0.22 -0.2 4,356,306 + BWI76_RS20840 0.24 -0.6 4,356,337 - BWI76_RS20840 0.27 +1.3 4,356,674 + BWI76_RS20840 0.59 -0.4 4,356,719 + BWI76_RS20840 0.63 -0.1 4,356,742 - BWI76_RS20840 0.65 +0.4 4,356,930 + BWI76_RS20840 0.83 -2.1
Or see this region's nucleotide sequence