Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13575

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13570 and BWI76_RS13575 are separated by 304 nucleotidesBWI76_RS13575 and BWI76_RS13580 are separated by 100 nucleotidesBWI76_RS13580 and BWI76_RS13585 are separated by 68 nucleotides BWI76_RS13570: BWI76_RS13570 - mandelate racemase/muconate lactonizing protein, at 2,829,188 to 2,830,384 _RS13570 BWI76_RS13575: BWI76_RS13575 - sugar binding transcriptional regulator, LacI family protein, at 2,830,689 to 2,831,693 _RS13575 BWI76_RS13580: BWI76_RS13580 - glutathione S-transferase domain protein, at 2,831,794 to 2,832,411 _RS13580 BWI76_RS13585: BWI76_RS13585 - 4-oxalocrotonate tautomerase, at 2,832,480 to 2,832,707 _RS13585 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -3 -2 -1 0 1at 2829.695 kb on + strand, within BWI76_RS13570at 2829.800 kb on - strand, within BWI76_RS13570at 2829.906 kb on - strand, within BWI76_RS13570at 2829.995 kb on - strand, within BWI76_RS13570at 2829.997 kb on + strand, within BWI76_RS13570at 2830.087 kb on + strand, within BWI76_RS13570at 2830.957 kb on + strand, within BWI76_RS13575at 2831.040 kb on + strand, within BWI76_RS13575at 2831.250 kb on + strand, within BWI76_RS13575at 2831.250 kb on + strand, within BWI76_RS13575at 2831.302 kb on + strand, within BWI76_RS13575at 2831.722 kb on + strandat 2831.739 kb on + strandat 2832.196 kb on - strand, within BWI76_RS13580at 2832.609 kb on - strand, within BWI76_RS13585at 2832.621 kb on + strand, within BWI76_RS13585at 2832.631 kb on + strand, within BWI76_RS13585

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,829,695 + BWI76_RS13570 0.42 -0.8
2,829,800 - BWI76_RS13570 0.51 -0.6
2,829,906 - BWI76_RS13570 0.60 +0.2
2,829,995 - BWI76_RS13570 0.67 -0.2
2,829,997 + BWI76_RS13570 0.68 +1.0
2,830,087 + BWI76_RS13570 0.75 +0.6
2,830,957 + BWI76_RS13575 0.27 -1.3
2,831,040 + BWI76_RS13575 0.35 -0.9
2,831,250 + BWI76_RS13575 0.56 -1.2
2,831,250 + BWI76_RS13575 0.56 -3.1
2,831,302 + BWI76_RS13575 0.61 -0.0
2,831,722 + -1.2
2,831,739 + -0.1
2,832,196 - BWI76_RS13580 0.65 -0.0
2,832,609 - BWI76_RS13585 0.57 +1.0
2,832,621 + BWI76_RS13585 0.62 -0.7
2,832,631 + BWI76_RS13585 0.66 +0.4

Or see this region's nucleotide sequence