Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08925

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08920 and BWI76_RS08925 are separated by 42 nucleotidesBWI76_RS08925 and BWI76_RS08930 are separated by 122 nucleotidesBWI76_RS08930 and BWI76_RS08935 are separated by 285 nucleotides BWI76_RS08920: BWI76_RS08920 - ATP-dependent DNA helicase DinG, at 1,878,476 to 1,880,620 _RS08920 BWI76_RS08925: BWI76_RS08925 - DNA-binding protein YbiB, at 1,880,663 to 1,881,631 _RS08925 BWI76_RS08930: BWI76_RS08930 - hypothetical protein, at 1,881,754 to 1,882,014 _RS08930 BWI76_RS08935: BWI76_RS08935 - hypothetical protein, at 1,882,300 to 1,882,566 _RS08935 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -1 0 1 2 3 4at 1879.779 kb on + strand, within BWI76_RS08920at 1879.804 kb on + strand, within BWI76_RS08920at 1880.646 kb on + strandat 1880.773 kb on + strand, within BWI76_RS08925at 1880.799 kb on + strand, within BWI76_RS08925at 1881.086 kb on + strand, within BWI76_RS08925at 1881.201 kb on - strand, within BWI76_RS08925at 1881.368 kb on + strand, within BWI76_RS08925at 1881.510 kb on + strand, within BWI76_RS08925at 1881.706 kb on + strandat 1881.727 kb on - strandat 1881.768 kb on + strandat 1882.032 kb on - strandat 1882.034 kb on + strandat 1882.034 kb on + strandat 1882.211 kb on + strandat 1882.571 kb on - strandat 1882.576 kb on + strandat 1882.589 kb on + strandat 1882.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,879,779 + BWI76_RS08920 0.61 -0.8
1,879,804 + BWI76_RS08920 0.62 +1.3
1,880,646 + -0.9
1,880,773 + BWI76_RS08925 0.11 +0.0
1,880,799 + BWI76_RS08925 0.14 -0.3
1,881,086 + BWI76_RS08925 0.44 -0.8
1,881,201 - BWI76_RS08925 0.56 -0.6
1,881,368 + BWI76_RS08925 0.73 -1.0
1,881,510 + BWI76_RS08925 0.87 -0.4
1,881,706 + +0.5
1,881,727 - +4.0
1,881,768 + +1.4
1,882,032 - -1.6
1,882,034 + -0.1
1,882,034 + -1.1
1,882,211 + +0.2
1,882,571 - +0.7
1,882,576 + -0.1
1,882,589 + +0.0
1,882,591 + +1.9

Or see this region's nucleotide sequence