Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02790 and BWI76_RS02795 are separated by 403 nucleotides BWI76_RS02795 and BWI76_RS02800 are separated by 180 nucleotides
BWI76_RS02790: BWI76_RS02790 - inorganic pyrophosphatase, at 569,224 to 569,751
_RS02790
BWI76_RS02795: BWI76_RS02795 - periplasmic binding protein/LacI transcriptional regulator, at 570,155 to 571,111
_RS02795
BWI76_RS02800: BWI76_RS02800 - ABC transporter, at 571,292 to 572,794
_RS02800
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 569.798 kb on - strand at 569.849 kb on - strand at 570.020 kb on + strand at 570.096 kb on + strand at 570.145 kb on - strand at 570.208 kb on + strand at 570.322 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.440 kb on + strand, within BWI76_RS02795 at 570.536 kb on - strand, within BWI76_RS02795 at 570.577 kb on + strand, within BWI76_RS02795 at 570.619 kb on + strand, within BWI76_RS02795 at 570.747 kb on - strand, within BWI76_RS02795 at 570.808 kb on - strand, within BWI76_RS02795 at 570.937 kb on + strand, within BWI76_RS02795 at 570.945 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 570.946 kb on - strand, within BWI76_RS02795 at 571.068 kb on - strand at 571.171 kb on - strand at 571.189 kb on + strand at 571.271 kb on + strand at 571.271 kb on + strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.279 kb on - strand at 571.311 kb on + strand at 571.430 kb on + strand at 571.767 kb on + strand, within BWI76_RS02800 at 571.814 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 571.912 kb on + strand, within BWI76_RS02800 at 572.002 kb on + strand, within BWI76_RS02800 at 572.058 kb on + strand, within BWI76_RS02800
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 569,798 - +1.5 569,849 - -0.3 570,020 + -1.4 570,096 + -0.0 570,145 - -1.0 570,208 + +0.5 570,322 + BWI76_RS02795 0.17 +4.4 570,440 + BWI76_RS02795 0.30 +2.9 570,440 + BWI76_RS02795 0.30 -0.0 570,536 - BWI76_RS02795 0.40 -1.9 570,577 + BWI76_RS02795 0.44 +0.2 570,619 + BWI76_RS02795 0.48 +0.5 570,747 - BWI76_RS02795 0.62 -0.2 570,808 - BWI76_RS02795 0.68 +4.5 570,937 + BWI76_RS02795 0.82 +2.4 570,945 - BWI76_RS02795 0.83 -0.8 570,946 - BWI76_RS02795 0.83 +0.4 570,946 - BWI76_RS02795 0.83 -0.5 571,068 - -0.3 571,171 - -0.6 571,189 + -0.9 571,271 + -0.2 571,271 + +3.3 571,279 - -1.4 571,279 - +2.3 571,279 - -1.6 571,311 + -0.4 571,430 + -0.2 571,767 + BWI76_RS02800 0.32 +1.0 571,814 + BWI76_RS02800 0.35 -0.6 571,912 + BWI76_RS02800 0.41 +0.2 571,912 + BWI76_RS02800 0.41 -0.1 572,002 + BWI76_RS02800 0.47 -0.5 572,058 + BWI76_RS02800 0.51 +1.0
Or see this region's nucleotide sequence