Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27730 and BWI76_RS27735 are separated by 209 nucleotides BWI76_RS27735 and BWI76_RS27740 are separated by 20 nucleotides BWI76_RS27740 and BWI76_RS27745 are separated by 294 nucleotides BWI76_RS27745 and BWI76_RS27750 are separated by 11 nucleotides
BWI76_RS27730: BWI76_RS27730 - ISNCY family transposase, at 5,754,980 to 5,755,933
_RS27730
BWI76_RS27735: BWI76_RS27735 - hypothetical protein, at 5,756,143 to 5,756,436
_RS27735
BWI76_RS27740: BWI76_RS27740 - LacI family transcriptional regulator, at 5,756,457 to 5,757,398
_RS27740
BWI76_RS27745: BWI76_RS27745 - PTS sugar transporter subunit IIB, at 5,757,693 to 5,758,004
_RS27745
BWI76_RS27750: BWI76_RS27750 - PTS lactose/cellobiose family transporter subunit IIC, at 5,758,016 to 5,759,341
_RS27750
Position (kb) 5756
5757
5758 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5755.539 kb on + strand, within BWI76_RS27730 at 5755.568 kb on - strand, within BWI76_RS27730 at 5755.671 kb on + strand, within BWI76_RS27730 at 5755.676 kb on + strand, within BWI76_RS27730 at 5755.684 kb on - strand, within BWI76_RS27730 at 5755.701 kb on + strand, within BWI76_RS27730 at 5755.741 kb on - strand, within BWI76_RS27730 at 5755.771 kb on + strand, within BWI76_RS27730 at 5755.789 kb on - strand, within BWI76_RS27730 at 5755.807 kb on - strand, within BWI76_RS27730 at 5755.809 kb on + strand, within BWI76_RS27730 at 5755.875 kb on + strand at 5755.993 kb on + strand at 5756.050 kb on + strand at 5756.180 kb on + strand, within BWI76_RS27735 at 5756.190 kb on + strand, within BWI76_RS27735 at 5756.207 kb on - strand, within BWI76_RS27735 at 5756.345 kb on - strand, within BWI76_RS27735 at 5756.420 kb on - strand at 5756.504 kb on + strand at 5756.597 kb on + strand, within BWI76_RS27740 at 5756.597 kb on + strand, within BWI76_RS27740 at 5756.597 kb on + strand, within BWI76_RS27740 at 5756.605 kb on - strand, within BWI76_RS27740 at 5756.605 kb on - strand, within BWI76_RS27740 at 5756.702 kb on + strand, within BWI76_RS27740 at 5756.728 kb on + strand, within BWI76_RS27740 at 5756.873 kb on - strand, within BWI76_RS27740 at 5756.897 kb on + strand, within BWI76_RS27740 at 5756.897 kb on + strand, within BWI76_RS27740 at 5756.952 kb on - strand, within BWI76_RS27740 at 5756.960 kb on + strand, within BWI76_RS27740 at 5756.993 kb on + strand, within BWI76_RS27740 at 5756.993 kb on + strand, within BWI76_RS27740 at 5757.001 kb on - strand, within BWI76_RS27740 at 5757.066 kb on + strand, within BWI76_RS27740 at 5757.092 kb on - strand, within BWI76_RS27740 at 5757.105 kb on - strand, within BWI76_RS27740 at 5757.187 kb on + strand, within BWI76_RS27740 at 5757.338 kb on - strand at 5757.437 kb on - strand at 5757.598 kb on + strand at 5757.604 kb on - strand at 5757.700 kb on + strand at 5757.713 kb on - strand at 5757.776 kb on - strand, within BWI76_RS27745 at 5757.799 kb on - strand, within BWI76_RS27745 at 5757.903 kb on + strand, within BWI76_RS27745 at 5757.931 kb on + strand, within BWI76_RS27745 at 5757.938 kb on + strand, within BWI76_RS27745 at 5757.999 kb on + strand at 5758.015 kb on + strand at 5758.035 kb on - strand at 5758.067 kb on - strand at 5758.080 kb on + strand at 5758.238 kb on - strand, within BWI76_RS27750 at 5758.252 kb on + strand, within BWI76_RS27750 at 5758.310 kb on - strand, within BWI76_RS27750 at 5758.344 kb on + strand, within BWI76_RS27750 at 5758.353 kb on + strand, within BWI76_RS27750 at 5758.389 kb on + strand, within BWI76_RS27750
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,755,539 + BWI76_RS27730 0.59 -2.5 5,755,568 - BWI76_RS27730 0.62 +2.1 5,755,671 + BWI76_RS27730 0.72 +0.7 5,755,676 + BWI76_RS27730 0.73 +0.5 5,755,684 - BWI76_RS27730 0.74 +0.2 5,755,701 + BWI76_RS27730 0.76 -0.4 5,755,741 - BWI76_RS27730 0.80 +0.1 5,755,771 + BWI76_RS27730 0.83 +0.2 5,755,789 - BWI76_RS27730 0.85 -1.0 5,755,807 - BWI76_RS27730 0.87 +0.7 5,755,809 + BWI76_RS27730 0.87 +0.3 5,755,875 + -0.5 5,755,993 + -0.9 5,756,050 + -0.1 5,756,180 + BWI76_RS27735 0.13 -0.5 5,756,190 + BWI76_RS27735 0.16 -0.6 5,756,207 - BWI76_RS27735 0.22 +0.1 5,756,345 - BWI76_RS27735 0.69 +0.5 5,756,420 - -0.7 5,756,504 + +0.7 5,756,597 + BWI76_RS27740 0.15 -0.1 5,756,597 + BWI76_RS27740 0.15 -0.5 5,756,597 + BWI76_RS27740 0.15 -1.1 5,756,605 - BWI76_RS27740 0.16 +0.5 5,756,605 - BWI76_RS27740 0.16 -1.7 5,756,702 + BWI76_RS27740 0.26 +0.3 5,756,728 + BWI76_RS27740 0.29 -0.9 5,756,873 - BWI76_RS27740 0.44 -0.4 5,756,897 + BWI76_RS27740 0.47 -0.5 5,756,897 + BWI76_RS27740 0.47 -0.8 5,756,952 - BWI76_RS27740 0.53 -1.6 5,756,960 + BWI76_RS27740 0.53 -1.4 5,756,993 + BWI76_RS27740 0.57 -0.7 5,756,993 + BWI76_RS27740 0.57 +0.5 5,757,001 - BWI76_RS27740 0.58 -1.9 5,757,066 + BWI76_RS27740 0.65 -0.9 5,757,092 - BWI76_RS27740 0.67 -1.3 5,757,105 - BWI76_RS27740 0.69 -1.0 5,757,187 + BWI76_RS27740 0.77 -1.0 5,757,338 - -0.9 5,757,437 - +0.0 5,757,598 + -0.1 5,757,604 - +0.2 5,757,700 + -0.6 5,757,713 - +0.7 5,757,776 - BWI76_RS27745 0.27 -0.2 5,757,799 - BWI76_RS27745 0.34 +0.8 5,757,903 + BWI76_RS27745 0.67 -0.1 5,757,931 + BWI76_RS27745 0.76 -0.6 5,757,938 + BWI76_RS27745 0.79 +1.5 5,757,999 + +0.4 5,758,015 + +1.2 5,758,035 - +0.4 5,758,067 - +0.2 5,758,080 + -0.3 5,758,238 - BWI76_RS27750 0.17 +0.3 5,758,252 + BWI76_RS27750 0.18 -0.4 5,758,310 - BWI76_RS27750 0.22 -0.8 5,758,344 + BWI76_RS27750 0.25 -0.0 5,758,353 + BWI76_RS27750 0.25 +0.2 5,758,389 + BWI76_RS27750 0.28 -2.0
Or see this region's nucleotide sequence