Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19590 and BWI76_RS19595 are separated by 126 nucleotides BWI76_RS19595 and BWI76_RS19600 are separated by 121 nucleotides BWI76_RS19600 and BWI76_RS19605 overlap by 4 nucleotides
BWI76_RS19590: BWI76_RS19590 - MFS transporter, at 4,095,420 to 4,096,778
_RS19590
BWI76_RS19595: BWI76_RS19595 - hypothetical protein, at 4,096,905 to 4,097,822
_RS19595
BWI76_RS19600: BWI76_RS19600 - hypothetical protein, at 4,097,944 to 4,098,342
_RS19600
BWI76_RS19605: BWI76_RS19605 - CidB/LrgB family autolysis modulator, at 4,098,339 to 4,099,034
_RS19605
Position (kb) 4096
4097
4098 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4096.395 kb on - strand, within BWI76_RS19590 at 4096.409 kb on + strand, within BWI76_RS19590 at 4096.417 kb on - strand, within BWI76_RS19590 at 4096.804 kb on - strand at 4097.321 kb on + strand, within BWI76_RS19595 at 4097.414 kb on - strand, within BWI76_RS19595 at 4097.477 kb on - strand, within BWI76_RS19595 at 4097.555 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.680 kb on - strand, within BWI76_RS19595 at 4097.690 kb on - strand, within BWI76_RS19595 at 4097.726 kb on + strand, within BWI76_RS19595 at 4097.770 kb on + strand at 4097.840 kb on - strand at 4097.994 kb on + strand, within BWI76_RS19600 at 4098.227 kb on - strand, within BWI76_RS19600 at 4098.240 kb on - strand, within BWI76_RS19600 at 4098.264 kb on - strand, within BWI76_RS19600 at 4098.353 kb on + strand at 4098.452 kb on + strand, within BWI76_RS19605 at 4098.544 kb on - strand, within BWI76_RS19605 at 4098.746 kb on + strand, within BWI76_RS19605
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,096,395 - BWI76_RS19590 0.72 -0.4 4,096,409 + BWI76_RS19590 0.73 -0.4 4,096,417 - BWI76_RS19590 0.73 -0.2 4,096,804 - -0.2 4,097,321 + BWI76_RS19595 0.45 -0.6 4,097,414 - BWI76_RS19595 0.55 -0.1 4,097,477 - BWI76_RS19595 0.62 +0.4 4,097,555 + BWI76_RS19595 0.71 -0.0 4,097,672 + BWI76_RS19595 0.84 -0.6 4,097,672 + BWI76_RS19595 0.84 -0.2 4,097,672 + BWI76_RS19595 0.84 +0.1 4,097,672 + BWI76_RS19595 0.84 +5.8 4,097,680 - BWI76_RS19595 0.84 -0.2 4,097,690 - BWI76_RS19595 0.86 -0.2 4,097,726 + BWI76_RS19595 0.89 +0.4 4,097,770 + +0.2 4,097,840 - -0.0 4,097,994 + BWI76_RS19600 0.13 -0.4 4,098,227 - BWI76_RS19600 0.71 -0.0 4,098,240 - BWI76_RS19600 0.74 -0.2 4,098,264 - BWI76_RS19600 0.80 +2.0 4,098,353 + -1.9 4,098,452 + BWI76_RS19605 0.16 -0.4 4,098,544 - BWI76_RS19605 0.29 +1.4 4,098,746 + BWI76_RS19605 0.58 -1.2
Or see this region's nucleotide sequence