Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15830 and BWI76_RS15835 are separated by 7 nucleotides BWI76_RS15835 and BWI76_RS15840 are separated by 151 nucleotides BWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotides BWI76_RS15845 and BWI76_RS15850 overlap by 4 nucleotides BWI76_RS15850 and BWI76_RS15855 overlap by 4 nucleotides BWI76_RS15855 and BWI76_RS15860 overlap by 4 nucleotides
BWI76_RS15830: BWI76_RS15830 - hypothetical protein, at 3,290,662 to 3,291,666
_RS15830
BWI76_RS15835: BWI76_RS15835 - hypothetical protein, at 3,291,674 to 3,291,871
_RS15835
BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805
_RS15840
BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079
_RS15845
BWI76_RS15850: BWI76_RS15850 - DUF1317 domain-containing protein, at 3,293,076 to 3,293,234
_RS15850
BWI76_RS15855: BWI76_RS15855 - hypothetical protein, at 3,293,231 to 3,293,458
_RS15855
BWI76_RS15860: BWI76_RS15860 - adenine-specific DNA methyltransferase, at 3,293,455 to 3,294,114
_RS15860
Position (kb)
3292
3293 Strain fitness (log2 ratio)
-9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 3291.068 kb on - strand, within BWI76_RS15830 at 3291.241 kb on + strand, within BWI76_RS15830 at 3291.274 kb on - strand, within BWI76_RS15830 at 3291.377 kb on - strand, within BWI76_RS15830 at 3291.400 kb on + strand, within BWI76_RS15830 at 3291.535 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.559 kb on - strand, within BWI76_RS15830 at 3291.589 kb on - strand at 3291.708 kb on - strand, within BWI76_RS15835 at 3291.716 kb on - strand, within BWI76_RS15835 at 3291.801 kb on + strand, within BWI76_RS15835 at 3291.830 kb on + strand, within BWI76_RS15835 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.119 kb on + strand, within BWI76_RS15840 at 3292.126 kb on - strand, within BWI76_RS15840 at 3292.127 kb on - strand, within BWI76_RS15840 at 3292.295 kb on + strand, within BWI76_RS15840 at 3292.349 kb on + strand, within BWI76_RS15840 at 3292.349 kb on - strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.520 kb on + strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840 at 3292.528 kb on - strand, within BWI76_RS15840 at 3292.674 kb on - strand, within BWI76_RS15840 at 3292.787 kb on - strand at 3293.003 kb on - strand, within BWI76_RS15845 at 3293.200 kb on - strand, within BWI76_RS15850 at 3293.215 kb on + strand, within BWI76_RS15850 at 3293.538 kb on + strand, within BWI76_RS15860 at 3293.610 kb on + strand, within BWI76_RS15860 at 3293.677 kb on - strand, within BWI76_RS15860 at 3293.694 kb on - strand, within BWI76_RS15860 at 3293.736 kb on + strand, within BWI76_RS15860
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,291,068 - BWI76_RS15830 0.40 +0.1 3,291,241 + BWI76_RS15830 0.58 -6.6 3,291,274 - BWI76_RS15830 0.61 -0.0 3,291,377 - BWI76_RS15830 0.71 -0.7 3,291,400 + BWI76_RS15830 0.73 -4.2 3,291,535 - BWI76_RS15830 0.87 +0.4 3,291,559 - BWI76_RS15830 0.89 -0.7 3,291,559 - BWI76_RS15830 0.89 -0.1 3,291,589 - -2.2 3,291,708 - BWI76_RS15835 0.17 -1.2 3,291,716 - BWI76_RS15835 0.21 +0.1 3,291,801 + BWI76_RS15835 0.64 -2.5 3,291,830 + BWI76_RS15835 0.79 -4.9 3,292,119 + BWI76_RS15840 0.12 -9.5 3,292,119 + BWI76_RS15840 0.12 -9.6 3,292,126 - BWI76_RS15840 0.13 -0.4 3,292,127 - BWI76_RS15840 0.13 -0.2 3,292,295 + BWI76_RS15840 0.35 -7.6 3,292,349 + BWI76_RS15840 0.42 -9.1 3,292,349 - BWI76_RS15840 0.42 -0.0 3,292,520 + BWI76_RS15840 0.63 -4.9 3,292,520 + BWI76_RS15840 0.63 -7.1 3,292,520 + BWI76_RS15840 0.63 -3.0 3,292,528 - BWI76_RS15840 0.64 +5.4 3,292,528 - BWI76_RS15840 0.64 +0.5 3,292,674 - BWI76_RS15840 0.83 -0.5 3,292,787 - +4.2 3,293,003 - BWI76_RS15845 0.74 -0.3 3,293,200 - BWI76_RS15850 0.78 +0.8 3,293,215 + BWI76_RS15850 0.87 -9.2 3,293,538 + BWI76_RS15860 0.13 -3.7 3,293,610 + BWI76_RS15860 0.23 -5.2 3,293,677 - BWI76_RS15860 0.34 +0.3 3,293,694 - BWI76_RS15860 0.36 +0.1 3,293,736 + BWI76_RS15860 0.43 -8.0
Or see this region's nucleotide sequence