Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13395

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13390 and BWI76_RS13395 overlap by 1 nucleotidesBWI76_RS13395 and BWI76_RS13400 are separated by 326 nucleotides BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601 _RS13390 BWI76_RS13395: BWI76_RS13395 - cytochrome D ubiquinol oxidase subunit I, at 2,792,601 to 2,793,998 _RS13395 BWI76_RS13400: BWI76_RS13400 - GntR family transcriptional regulator, at 2,794,325 to 2,795,737 _RS13400 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2791.609 kb on + strandat 2791.672 kb on + strandat 2791.692 kb on + strand, within BWI76_RS13390at 2791.692 kb on + strand, within BWI76_RS13390at 2791.700 kb on - strand, within BWI76_RS13390at 2791.742 kb on - strand, within BWI76_RS13390at 2791.948 kb on - strand, within BWI76_RS13390at 2792.004 kb on + strand, within BWI76_RS13390at 2792.458 kb on + strand, within BWI76_RS13390at 2792.540 kb on + strandat 2792.548 kb on - strandat 2792.611 kb on + strandat 2792.726 kb on - strandat 2792.938 kb on - strand, within BWI76_RS13395at 2793.007 kb on - strand, within BWI76_RS13395at 2793.150 kb on - strand, within BWI76_RS13395at 2793.289 kb on + strand, within BWI76_RS13395at 2793.425 kb on - strand, within BWI76_RS13395at 2793.509 kb on - strand, within BWI76_RS13395at 2793.623 kb on - strand, within BWI76_RS13395at 2793.650 kb on + strand, within BWI76_RS13395at 2794.031 kb on + strandat 2794.147 kb on - strandat 2794.252 kb on - strandat 2794.381 kb on + strandat 2794.722 kb on - strand, within BWI76_RS13400

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,791,609 + -1.8
2,791,672 + -1.9
2,791,692 + BWI76_RS13390 0.10 -1.8
2,791,692 + BWI76_RS13390 0.10 -2.1
2,791,700 - BWI76_RS13390 0.11 -2.6
2,791,742 - BWI76_RS13390 0.15 -4.0
2,791,948 - BWI76_RS13390 0.35 -2.2
2,792,004 + BWI76_RS13390 0.41 -2.2
2,792,458 + BWI76_RS13390 0.86 -1.5
2,792,540 + -2.5
2,792,548 - -2.4
2,792,611 + -1.1
2,792,726 - -1.7
2,792,938 - BWI76_RS13395 0.24 -2.5
2,793,007 - BWI76_RS13395 0.29 -0.5
2,793,150 - BWI76_RS13395 0.39 -2.5
2,793,289 + BWI76_RS13395 0.49 -2.5
2,793,425 - BWI76_RS13395 0.59 -2.6
2,793,509 - BWI76_RS13395 0.65 -5.1
2,793,623 - BWI76_RS13395 0.73 +0.2
2,793,650 + BWI76_RS13395 0.75 -0.6
2,794,031 + -2.4
2,794,147 - +0.0
2,794,252 - +0.1
2,794,381 + -1.6
2,794,722 - BWI76_RS13400 0.28 -0.9

Or see this region's nucleotide sequence