Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12255 and BWI76_RS12260 overlap by 17 nucleotides BWI76_RS12260 and BWI76_RS12265 are separated by 106 nucleotides BWI76_RS12265 and BWI76_RS12270 are separated by 87 nucleotides
BWI76_RS12255: BWI76_RS12255 - hypothetical protein, at 2,560,994 to 2,562,418
_RS12255
BWI76_RS12260: BWI76_RS12260 - hypothetical protein, at 2,562,402 to 2,563,514
_RS12260
BWI76_RS12265: BWI76_RS12265 - hypothetical protein, at 2,563,621 to 2,564,385
_RS12265
BWI76_RS12270: BWI76_RS12270 - hypothetical protein, at 2,564,473 to 2,565,609
_RS12270
Position (kb)
2562
2563
2564 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2561.446 kb on + strand, within BWI76_RS12255 at 2561.446 kb on + strand, within BWI76_RS12255 at 2561.454 kb on - strand, within BWI76_RS12255 at 2561.477 kb on - strand, within BWI76_RS12255 at 2561.650 kb on + strand, within BWI76_RS12255 at 2561.717 kb on + strand, within BWI76_RS12255 at 2561.783 kb on - strand, within BWI76_RS12255 at 2561.784 kb on + strand, within BWI76_RS12255 at 2561.794 kb on + strand, within BWI76_RS12255 at 2562.083 kb on + strand, within BWI76_RS12255 at 2562.083 kb on + strand, within BWI76_RS12255 at 2562.091 kb on - strand, within BWI76_RS12255 at 2562.382 kb on + strand at 2562.390 kb on - strand at 2562.390 kb on - strand at 2562.607 kb on - strand, within BWI76_RS12260 at 2562.931 kb on - strand, within BWI76_RS12260 at 2563.018 kb on - strand, within BWI76_RS12260 at 2563.113 kb on - strand, within BWI76_RS12260 at 2563.173 kb on - strand, within BWI76_RS12260 at 2563.459 kb on + strand at 2563.729 kb on + strand, within BWI76_RS12265 at 2563.737 kb on - strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.969 kb on - strand, within BWI76_RS12265 at 2564.325 kb on - strand at 2564.464 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 2,561,446 + BWI76_RS12255 0.32 -0.1 2,561,446 + BWI76_RS12255 0.32 -1.3 2,561,454 - BWI76_RS12255 0.32 -1.9 2,561,477 - BWI76_RS12255 0.34 -1.7 2,561,650 + BWI76_RS12255 0.46 -2.3 2,561,717 + BWI76_RS12255 0.51 -1.4 2,561,783 - BWI76_RS12255 0.55 -0.7 2,561,784 + BWI76_RS12255 0.55 -2.2 2,561,794 + BWI76_RS12255 0.56 -1.9 2,562,083 + BWI76_RS12255 0.76 -3.2 2,562,083 + BWI76_RS12255 0.76 -1.0 2,562,091 - BWI76_RS12255 0.77 -2.3 2,562,382 + -3.7 2,562,390 - -0.6 2,562,390 - -0.1 2,562,607 - BWI76_RS12260 0.18 -1.9 2,562,931 - BWI76_RS12260 0.48 -1.4 2,563,018 - BWI76_RS12260 0.55 -0.4 2,563,113 - BWI76_RS12260 0.64 -1.5 2,563,173 - BWI76_RS12260 0.69 -0.6 2,563,459 + -0.4 2,563,729 + BWI76_RS12265 0.14 -1.9 2,563,737 - BWI76_RS12265 0.15 -1.5 2,563,917 + BWI76_RS12265 0.39 -0.6 2,563,917 + BWI76_RS12265 0.39 -0.1 2,563,917 + BWI76_RS12265 0.39 +5.2 2,563,969 - BWI76_RS12265 0.45 -1.5 2,564,325 - -1.7 2,564,464 + -0.1
Or see this region's nucleotide sequence