Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12130

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12110 and BWI76_RS12115 overlap by 4 nucleotidesBWI76_RS12115 and BWI76_RS12120 overlap by 8 nucleotidesBWI76_RS12120 and BWI76_RS12125 are separated by 0 nucleotidesBWI76_RS12125 and BWI76_RS12130 overlap by 1 nucleotidesBWI76_RS12130 and BWI76_RS12135 overlap by 4 nucleotides BWI76_RS12110: BWI76_RS12110 - hypothetical protein, at 2,542,145 to 2,542,930 _RS12110 BWI76_RS12115: BWI76_RS12115 - hypothetical protein, at 2,542,927 to 2,543,130 _RS12115 BWI76_RS12120: BWI76_RS12120 - hypothetical protein, at 2,543,123 to 2,543,308 _RS12120 BWI76_RS12125: BWI76_RS12125 - hypothetical protein, at 2,543,309 to 2,543,521 _RS12125 BWI76_RS12130: BWI76_RS12130 - hypothetical protein, at 2,543,521 to 2,543,778 _RS12130 BWI76_RS12135: BWI76_RS12135 - C-5 cytosine-specific DNA methylase, at 2,543,775 to 2,545,757 _RS12135 Position (kb) 2543 2544Strain fitness (log2 ratio) -3 -2 -1 0 1at 2542.613 kb on + strand, within BWI76_RS12110at 2542.655 kb on - strand, within BWI76_RS12110at 2542.697 kb on + strand, within BWI76_RS12110at 2542.866 kb on + strandat 2543.010 kb on - strand, within BWI76_RS12115at 2543.010 kb on - strand, within BWI76_RS12115at 2543.015 kb on - strand, within BWI76_RS12115at 2543.015 kb on - strand, within BWI76_RS12115at 2543.107 kb on - strand, within BWI76_RS12115at 2543.108 kb on - strand, within BWI76_RS12115at 2543.311 kb on + strandat 2543.311 kb on + strandat 2543.311 kb on + strandat 2543.456 kb on + strand, within BWI76_RS12125at 2543.490 kb on - strand, within BWI76_RS12125at 2543.913 kb on - strandat 2543.927 kb on + strandat 2544.089 kb on - strand, within BWI76_RS12135at 2544.253 kb on + strandat 2544.529 kb on + strand, within BWI76_RS12135at 2544.604 kb on + strand, within BWI76_RS12135at 2544.614 kb on - strand, within BWI76_RS12135

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,542,613 + BWI76_RS12110 0.60 -0.1
2,542,655 - BWI76_RS12110 0.65 -0.8
2,542,697 + BWI76_RS12110 0.70 -1.9
2,542,866 + -0.3
2,543,010 - BWI76_RS12115 0.41 -0.7
2,543,010 - BWI76_RS12115 0.41 -1.1
2,543,015 - BWI76_RS12115 0.43 -0.8
2,543,015 - BWI76_RS12115 0.43 -1.0
2,543,107 - BWI76_RS12115 0.88 -2.8
2,543,108 - BWI76_RS12115 0.89 -1.6
2,543,311 + -1.2
2,543,311 + -0.8
2,543,311 + -0.6
2,543,456 + BWI76_RS12125 0.69 -0.5
2,543,490 - BWI76_RS12125 0.85 -0.9
2,543,913 - -0.4
2,543,927 + -0.9
2,544,089 - BWI76_RS12135 0.16 -1.9
2,544,253 + +1.5
2,544,529 + BWI76_RS12135 0.38 -2.0
2,544,604 + BWI76_RS12135 0.42 -0.2
2,544,614 - BWI76_RS12135 0.42 -0.3

Or see this region's nucleotide sequence