Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07320

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07315 and BWI76_RS07320 are separated by 136 nucleotidesBWI76_RS07320 and BWI76_RS07325 are separated by 165 nucleotides BWI76_RS07315: BWI76_RS07315 - PTS sugar transporter, at 1,540,518 to 1,541,888 _RS07315 BWI76_RS07320: BWI76_RS07320 - carbohydrate porin, at 1,542,025 to 1,543,542 _RS07320 BWI76_RS07325: BWI76_RS07325 - aminoimidazole riboside kinase, at 1,543,708 to 1,544,631 _RS07325 Position (kb) 1542 1543 1544Strain fitness (log2 ratio) -3 -2 -1 0 1at 1541.183 kb on - strand, within BWI76_RS07315at 1541.310 kb on - strand, within BWI76_RS07315at 1541.316 kb on - strand, within BWI76_RS07315at 1542.238 kb on - strand, within BWI76_RS07320at 1542.384 kb on + strand, within BWI76_RS07320at 1542.441 kb on + strand, within BWI76_RS07320at 1542.441 kb on + strand, within BWI76_RS07320at 1542.536 kb on + strand, within BWI76_RS07320at 1542.536 kb on + strand, within BWI76_RS07320at 1542.536 kb on + strandat 1542.536 kb on - strand, within BWI76_RS07320at 1542.544 kb on - strand, within BWI76_RS07320at 1542.748 kb on - strand, within BWI76_RS07320at 1542.933 kb on + strand, within BWI76_RS07320at 1543.915 kb on - strand, within BWI76_RS07325at 1543.915 kb on - strand, within BWI76_RS07325at 1543.984 kb on + strand, within BWI76_RS07325at 1544.127 kb on + strand, within BWI76_RS07325at 1544.247 kb on + strand, within BWI76_RS07325at 1544.250 kb on - strand, within BWI76_RS07325at 1544.321 kb on - strand, within BWI76_RS07325at 1544.361 kb on + strand, within BWI76_RS07325at 1544.461 kb on + strand, within BWI76_RS07325

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,541,183 - BWI76_RS07315 0.49 +0.5
1,541,310 - BWI76_RS07315 0.58 +0.2
1,541,316 - BWI76_RS07315 0.58 +0.3
1,542,238 - BWI76_RS07320 0.14 -0.2
1,542,384 + BWI76_RS07320 0.24 -2.2
1,542,441 + BWI76_RS07320 0.27 -0.1
1,542,441 + BWI76_RS07320 0.27 +1.1
1,542,536 + BWI76_RS07320 0.34 -0.5
1,542,536 + BWI76_RS07320 0.34 -0.0
1,542,536 + +0.7
1,542,536 - BWI76_RS07320 0.34 -0.1
1,542,544 - BWI76_RS07320 0.34 -0.2
1,542,748 - BWI76_RS07320 0.48 +0.4
1,542,933 + BWI76_RS07320 0.60 +0.9
1,543,915 - BWI76_RS07325 0.22 -0.8
1,543,915 - BWI76_RS07325 0.22 +0.4
1,543,984 + BWI76_RS07325 0.30 -0.3
1,544,127 + BWI76_RS07325 0.45 +0.1
1,544,247 + BWI76_RS07325 0.58 -0.9
1,544,250 - BWI76_RS07325 0.59 +1.1
1,544,321 - BWI76_RS07325 0.66 +1.1
1,544,361 + BWI76_RS07325 0.71 -2.9
1,544,461 + BWI76_RS07325 0.81 +0.4

Or see this region's nucleotide sequence