Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02680 and BWI76_RS02685 are separated by 4 nucleotides BWI76_RS02685 and BWI76_RS02690 are separated by 139 nucleotides BWI76_RS02690 and BWI76_RS02695 overlap by 69 nucleotides BWI76_RS02695 and BWI76_RS02700 are separated by 305 nucleotides
BWI76_RS02680: BWI76_RS02680 - EamA family transporter, at 544,058 to 545,011
_RS02680
BWI76_RS02685: BWI76_RS02685 - opacity-associated protein, at 545,016 to 545,675
_RS02685
BWI76_RS02690: BWI76_RS02690 - hypothetical protein, at 545,815 to 546,012
_RS02690
BWI76_RS02695: BWI76_RS02695 - peptidyl-prolyl cis-trans isomerase, at 545,944 to 546,564
_RS02695
BWI76_RS02700: BWI76_RS02700 - D-serine/D-alanine/glycine transporter, at 546,870 to 548,273
_RS02700
Position (kb) 545
546
547 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 544.880 kb on + strand, within BWI76_RS02680 at 545.124 kb on + strand, within BWI76_RS02685 at 545.147 kb on + strand, within BWI76_RS02685 at 545.150 kb on - strand, within BWI76_RS02685 at 545.207 kb on + strand, within BWI76_RS02685 at 545.224 kb on + strand, within BWI76_RS02685 at 545.265 kb on - strand, within BWI76_RS02685 at 545.499 kb on + strand, within BWI76_RS02685 at 545.507 kb on - strand, within BWI76_RS02685 at 545.713 kb on + strand at 545.776 kb on - strand at 545.776 kb on - strand at 545.782 kb on + strand at 545.867 kb on + strand, within BWI76_RS02690 at 545.966 kb on + strand at 546.155 kb on - strand, within BWI76_RS02695 at 546.318 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.480 kb on + strand, within BWI76_RS02695 at 546.519 kb on + strand at 546.597 kb on - strand at 546.621 kb on - strand at 546.708 kb on + strand at 546.792 kb on + strand at 546.804 kb on + strand at 546.806 kb on - strand at 546.841 kb on + strand at 546.879 kb on - strand at 546.889 kb on - strand at 546.889 kb on - strand at 546.905 kb on + strand at 546.913 kb on - strand at 546.982 kb on + strand at 547.000 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 544,880 + BWI76_RS02680 0.86 -0.1 545,124 + BWI76_RS02685 0.16 +2.2 545,147 + BWI76_RS02685 0.20 +0.9 545,150 - BWI76_RS02685 0.20 +0.8 545,207 + BWI76_RS02685 0.29 -0.2 545,224 + BWI76_RS02685 0.32 +0.9 545,265 - BWI76_RS02685 0.38 +0.5 545,499 + BWI76_RS02685 0.73 -0.1 545,507 - BWI76_RS02685 0.74 -0.2 545,713 + -0.1 545,776 - +0.9 545,776 - +0.4 545,782 + +0.7 545,867 + BWI76_RS02690 0.26 +3.0 545,966 + -0.9 546,155 - BWI76_RS02695 0.34 -0.8 546,318 + BWI76_RS02695 0.60 +0.0 546,480 + BWI76_RS02695 0.86 -0.9 546,480 + BWI76_RS02695 0.86 -0.8 546,519 + -1.0 546,597 - -0.0 546,621 - -0.8 546,708 + -0.1 546,792 + -0.2 546,804 + -0.6 546,806 - -0.3 546,841 + -0.7 546,879 - -0.6 546,889 - -2.4 546,889 - -0.5 546,905 + -0.0 546,913 - -0.2 546,982 + -1.0 547,000 - -1.8
Or see this region's nucleotide sequence