Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26560 and BWI76_RS26565 are separated by 33 nucleotides BWI76_RS26565 and BWI76_RS26570 are separated by 230 nucleotides
BWI76_RS26560: BWI76_RS26560 - sigma-54-dependent Fis family transcriptional regulator, at 5,496,758 to 5,498,641
_RS26560
BWI76_RS26565: BWI76_RS26565 - membrane protein, at 5,498,675 to 5,499,871
_RS26565
BWI76_RS26570: BWI76_RS26570 - anion permease, at 5,500,102 to 5,501,598
_RS26570
Position (kb) 5498
5499
5500 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 5497.709 kb on + strand, within BWI76_RS26560 at 5497.712 kb on - strand at 5497.714 kb on + strand, within BWI76_RS26560 at 5497.714 kb on + strand, within BWI76_RS26560 at 5497.714 kb on + strand, within BWI76_RS26560 at 5497.722 kb on - strand, within BWI76_RS26560 at 5497.761 kb on + strand, within BWI76_RS26560 at 5497.769 kb on - strand at 5497.799 kb on - strand, within BWI76_RS26560 at 5497.803 kb on + strand, within BWI76_RS26560 at 5497.826 kb on + strand, within BWI76_RS26560 at 5497.827 kb on + strand, within BWI76_RS26560 at 5497.832 kb on - strand, within BWI76_RS26560 at 5497.834 kb on - strand, within BWI76_RS26560 at 5497.834 kb on - strand, within BWI76_RS26560 at 5497.834 kb on - strand, within BWI76_RS26560 at 5497.884 kb on + strand, within BWI76_RS26560 at 5497.886 kb on + strand, within BWI76_RS26560 at 5497.887 kb on - strand, within BWI76_RS26560 at 5497.893 kb on - strand, within BWI76_RS26560 at 5497.893 kb on - strand, within BWI76_RS26560 at 5497.894 kb on - strand, within BWI76_RS26560 at 5497.910 kb on + strand, within BWI76_RS26560 at 5497.910 kb on + strand, within BWI76_RS26560 at 5497.910 kb on + strand, within BWI76_RS26560 at 5497.910 kb on + strand, within BWI76_RS26560 at 5497.918 kb on - strand, within BWI76_RS26560 at 5497.918 kb on - strand, within BWI76_RS26560 at 5497.939 kb on - strand, within BWI76_RS26560 at 5497.939 kb on - strand, within BWI76_RS26560 at 5497.977 kb on - strand, within BWI76_RS26560 at 5497.979 kb on + strand, within BWI76_RS26560 at 5497.987 kb on - strand, within BWI76_RS26560 at 5497.989 kb on + strand, within BWI76_RS26560 at 5498.028 kb on + strand, within BWI76_RS26560 at 5498.035 kb on + strand, within BWI76_RS26560 at 5498.043 kb on - strand, within BWI76_RS26560 at 5498.043 kb on - strand, within BWI76_RS26560 at 5498.043 kb on - strand, within BWI76_RS26560 at 5498.043 kb on - strand, within BWI76_RS26560 at 5498.092 kb on + strand, within BWI76_RS26560 at 5498.143 kb on - strand, within BWI76_RS26560 at 5498.147 kb on + strand, within BWI76_RS26560 at 5498.164 kb on + strand, within BWI76_RS26560 at 5498.174 kb on + strand, within BWI76_RS26560 at 5498.174 kb on + strand, within BWI76_RS26560 at 5498.174 kb on + strand, within BWI76_RS26560 at 5498.224 kb on - strand, within BWI76_RS26560 at 5498.238 kb on + strand, within BWI76_RS26560 at 5498.435 kb on - strand, within BWI76_RS26560 at 5498.457 kb on + strand at 5498.600 kb on + strand at 5498.613 kb on + strand at 5498.613 kb on + strand at 5498.628 kb on + strand at 5498.664 kb on - strand at 5498.688 kb on + strand at 5498.696 kb on - strand at 5498.705 kb on + strand at 5498.706 kb on + strand at 5498.727 kb on + strand at 5498.783 kb on + strand at 5498.791 kb on - strand at 5498.806 kb on + strand, within BWI76_RS26565 at 5498.851 kb on + strand, within BWI76_RS26565 at 5498.875 kb on - strand, within BWI76_RS26565 at 5498.948 kb on - strand, within BWI76_RS26565 at 5498.950 kb on + strand, within BWI76_RS26565 at 5498.958 kb on - strand, within BWI76_RS26565 at 5499.346 kb on + strand, within BWI76_RS26565 at 5499.354 kb on - strand, within BWI76_RS26565 at 5499.455 kb on - strand, within BWI76_RS26565 at 5499.792 kb on + strand at 5499.864 kb on - strand at 5499.864 kb on - strand at 5499.893 kb on - strand at 5500.097 kb on + strand at 5500.318 kb on + strand, within BWI76_RS26570 at 5500.804 kb on + strand, within BWI76_RS26570 at 5500.822 kb on - strand, within BWI76_RS26570 at 5500.844 kb on + strand, within BWI76_RS26570
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,497,709 + BWI76_RS26560 0.50 -0.6 5,497,712 - +2.6 5,497,714 + BWI76_RS26560 0.51 +0.4 5,497,714 + BWI76_RS26560 0.51 +1.6 5,497,714 + BWI76_RS26560 0.51 +2.4 5,497,722 - BWI76_RS26560 0.51 +0.5 5,497,761 + BWI76_RS26560 0.53 -0.8 5,497,769 - -0.3 5,497,799 - BWI76_RS26560 0.55 +1.4 5,497,803 + BWI76_RS26560 0.55 +0.5 5,497,826 + BWI76_RS26560 0.57 -0.1 5,497,827 + BWI76_RS26560 0.57 -0.2 5,497,832 - BWI76_RS26560 0.57 -0.4 5,497,834 - BWI76_RS26560 0.57 +4.6 5,497,834 - BWI76_RS26560 0.57 -1.4 5,497,834 - BWI76_RS26560 0.57 +1.3 5,497,884 + BWI76_RS26560 0.60 +0.8 5,497,886 + BWI76_RS26560 0.60 -0.6 5,497,887 - BWI76_RS26560 0.60 -0.5 5,497,893 - BWI76_RS26560 0.60 +0.6 5,497,893 - BWI76_RS26560 0.60 +1.0 5,497,894 - BWI76_RS26560 0.60 -0.6 5,497,910 + BWI76_RS26560 0.61 +0.5 5,497,910 + BWI76_RS26560 0.61 -0.9 5,497,910 + BWI76_RS26560 0.61 -2.1 5,497,910 + BWI76_RS26560 0.61 -1.5 5,497,918 - BWI76_RS26560 0.62 -0.8 5,497,918 - BWI76_RS26560 0.62 -1.3 5,497,939 - BWI76_RS26560 0.63 -1.8 5,497,939 - BWI76_RS26560 0.63 -0.7 5,497,977 - BWI76_RS26560 0.65 +0.6 5,497,979 + BWI76_RS26560 0.65 -1.0 5,497,987 - BWI76_RS26560 0.65 +0.1 5,497,989 + BWI76_RS26560 0.65 +1.3 5,498,028 + BWI76_RS26560 0.67 +0.6 5,498,035 + BWI76_RS26560 0.68 +0.1 5,498,043 - BWI76_RS26560 0.68 +0.1 5,498,043 - BWI76_RS26560 0.68 +1.5 5,498,043 - BWI76_RS26560 0.68 -0.1 5,498,043 - BWI76_RS26560 0.68 +0.5 5,498,092 + BWI76_RS26560 0.71 -0.1 5,498,143 - BWI76_RS26560 0.74 +0.1 5,498,147 + BWI76_RS26560 0.74 -0.3 5,498,164 + BWI76_RS26560 0.75 -2.5 5,498,174 + BWI76_RS26560 0.75 +0.9 5,498,174 + BWI76_RS26560 0.75 -0.5 5,498,174 + BWI76_RS26560 0.75 +0.8 5,498,224 - BWI76_RS26560 0.78 -0.7 5,498,238 + BWI76_RS26560 0.79 -1.0 5,498,435 - BWI76_RS26560 0.89 +0.2 5,498,457 + -1.5 5,498,600 + -0.4 5,498,613 + +0.2 5,498,613 + -1.2 5,498,628 + -0.0 5,498,664 - +1.3 5,498,688 + +0.7 5,498,696 - -1.1 5,498,705 + -0.4 5,498,706 + +0.6 5,498,727 + +4.1 5,498,783 + +1.5 5,498,791 - +2.7 5,498,806 + BWI76_RS26565 0.11 -0.7 5,498,851 + BWI76_RS26565 0.15 -0.4 5,498,875 - BWI76_RS26565 0.17 +0.3 5,498,948 - BWI76_RS26565 0.23 +0.6 5,498,950 + BWI76_RS26565 0.23 +0.9 5,498,958 - BWI76_RS26565 0.24 +6.3 5,499,346 + BWI76_RS26565 0.56 +2.9 5,499,354 - BWI76_RS26565 0.57 +0.2 5,499,455 - BWI76_RS26565 0.65 -0.7 5,499,792 + +1.4 5,499,864 - -1.2 5,499,864 - -0.2 5,499,893 - +0.6 5,500,097 + -0.8 5,500,318 + BWI76_RS26570 0.14 -1.0 5,500,804 + BWI76_RS26570 0.47 -0.2 5,500,822 - BWI76_RS26570 0.48 -1.0 5,500,844 + BWI76_RS26570 0.50 -0.6
Or see this region's nucleotide sequence