Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26065

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS26060 and BWI76_RS26065 are separated by 3 nucleotidesBWI76_RS26065 and BWI76_RS26070 overlap by 8 nucleotidesBWI76_RS26070 and BWI76_RS26075 are separated by 17 nucleotides BWI76_RS26060: BWI76_RS26060 - tryptophan--tRNA ligase, at 5,385,429 to 5,386,433 _RS26060 BWI76_RS26065: BWI76_RS26065 - phosphoglycolate phosphatase, at 5,386,437 to 5,387,186 _RS26065 BWI76_RS26070: BWI76_RS26070 - ribulose-phosphate 3-epimerase, at 5,387,179 to 5,387,856 _RS26070 BWI76_RS26075: BWI76_RS26075 - DNA adenine methylase, at 5,387,874 to 5,388,701 _RS26075 Position (kb) 5386 5387 5388Strain fitness (log2 ratio) -2 -1 0 1at 5385.440 kb on - strandat 5385.542 kb on - strand, within BWI76_RS26060at 5385.542 kb on - strand, within BWI76_RS26060at 5385.564 kb on + strand, within BWI76_RS26060at 5385.610 kb on + strand, within BWI76_RS26060at 5385.706 kb on - strand, within BWI76_RS26060at 5385.867 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.074 kb on - strand, within BWI76_RS26060at 5386.190 kb on + strand, within BWI76_RS26060at 5386.236 kb on - strand, within BWI76_RS26060at 5386.258 kb on + strand, within BWI76_RS26060at 5386.266 kb on - strand, within BWI76_RS26060at 5386.266 kb on - strand, within BWI76_RS26060at 5386.393 kb on + strandat 5386.393 kb on + strandat 5386.401 kb on - strandat 5386.542 kb on - strand, within BWI76_RS26065at 5386.657 kb on + strand, within BWI76_RS26065at 5386.746 kb on + strand, within BWI76_RS26065at 5386.993 kb on + strand, within BWI76_RS26065at 5387.143 kb on - strandat 5387.194 kb on - strandat 5387.903 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
5,385,440 - -0.6
5,385,542 - BWI76_RS26060 0.11 -0.8
5,385,542 - BWI76_RS26060 0.11 -0.4
5,385,564 + BWI76_RS26060 0.13 -0.9
5,385,610 + BWI76_RS26060 0.18 -1.3
5,385,706 - BWI76_RS26060 0.28 -0.1
5,385,867 - BWI76_RS26060 0.44 -0.6
5,386,074 - BWI76_RS26060 0.64 +0.2
5,386,074 - BWI76_RS26060 0.64 -2.4
5,386,074 - BWI76_RS26060 0.64 -0.9
5,386,190 + BWI76_RS26060 0.76 +0.2
5,386,236 - BWI76_RS26060 0.80 -1.5
5,386,258 + BWI76_RS26060 0.82 -0.8
5,386,266 - BWI76_RS26060 0.83 -1.8
5,386,266 - BWI76_RS26060 0.83 -0.0
5,386,393 + +0.4
5,386,393 + -0.1
5,386,401 - +1.4
5,386,542 - BWI76_RS26065 0.14 -0.5
5,386,657 + BWI76_RS26065 0.29 -2.3
5,386,746 + BWI76_RS26065 0.41 -1.7
5,386,993 + BWI76_RS26065 0.74 -1.8
5,387,143 - +1.1
5,387,194 - -1.3
5,387,903 - -0.8

Or see this region's nucleotide sequence